Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0120 ATGCACAGAGAGAAGAAATTGAACAAGCTTTCAATACCGCAGAAGGGAAAACGATGTCTGAGAGCTTTACATCCTTTCATACCCTGCAACTCTAAGAGCACTTTGTGGGTAACTTTGAGGAGAGAAGAAGAAGATGATGAACAAGAAGACGATTGTAACATGGGAATAGCAACACCGCCAGTGCTTCCGCCGATTCTTTCTCAGTCCGGCAAGCCCCACCATTCATTTTCCTCCATAATAGACTCCAATTCTATGTCCCAAGATTATCACCAAGGAATCTTCACCTTCGAGAGACCCACAACTCTAACTCAGCAACAGCAGCACCAGTTAGCGCAGCAGATCCGGAGAGACAAGGTGAGGGTGCAAGGGGGGTTGGACCACCCGCCTCCGCCGCTTGTGGGTATTGAGGAAGAAGAATCTGGAAACCTTCCCGTTTATGAAACCGGCGGGATGTTATCGGAGATGTTCAATTTCCCTCCTCCCGGCGCCACCGCCACTGAATTGTTGGAACAACAACATCAACCAGCCGCTCCCATGTATCGGACCGCCAGGCCGCAACCGCAGGCCACGGATTGGTACAGACAAGGGATGTTGAGTGGGTTGGGAGATTCAAAGAATCAGAATAGCCGTGATAGTACTAGTATACTAGAGCAACACCATCATCATCATCATCCTCAGATTTCAAGTATGAATGCGGACTCAGCCGCCGCCATGCAGCTTTTTCTGATGAACCCGCAAACAAGATCTCCGTCTCCGACGACTCAAAACCACACTCCTAATTCAACTTCTCTGCAAGGCTTCAGTACACAAGGAGGGGGTTTTGGTCCATTCACATGGGTTCCTCATAGCTCTCAGCCAGGAGCGGCGGGAGGTAATCCACCACCACAAATTGGAGGGGTTATGGAAGCTCAGGGGCTTTCGTTATCATTATCGTCGTCGCTGCAACATTTGGAAGCGGCCAAAGCCGAGGAATTGAGGATGGGAGAGAGTGGGTTTCTGTATTACAATCAAGGATCCGGAGGAGGAGGGTCTTCTTCGTCTGGTGGTGGTCAATATCCGTACAAGACATTGCATTTCCAAGGGTCGTCCGTAGTCGGGGCGGGTCAGAACCATGTGGGGTTCGGGTCGTCGTCGTCATTAGGGGTGGTGAACGTGCTGAGGAATTCAAAGTACGTGAAAGCTGCACAAGAATTGCTCGAAGAATTCTGTAGTGTTGGGAGAGGTCAGTTCAAGAGGAACAAGTTCACCAGACAAAACTCAAACCCTAGTTCCAATCCTCCTCCTCCGGCCACCGCCGCAGCTACTGGTTCTTCTTCTTCATCTAAGGATCCTCCTCCTTTGTCATCGGCCGATAGGATTGAGCATCAGAGAAGGAAAGTCAAACTTCTATCCATGCTTGACGAGGTGGATCGGAGATACAACCATTACTGCGAACAAATGCAAATGGTGGTGAACTCGTTTGACATGGTGATGGGATTCGGGTCGGCAGTGCCGTACACGGCCTTAGCTCAGAAGGCGATGTCACGGCATTTCCGGTGCCTGAAGGACGCCATAACGGCGCAGCTGAAGCAAAGTTGCGAGCTTCTGGGAGAGAAGGACGGAGCAGGAAGCTCAGGGATAACCAAAGGAGAGACACCAAGGCTGAAGCTTCTAGAACAAAGCCTGAGACAGCAGAGAGCCTTCCACCAGATGGGGATGATGGAACAAGAAGCATGGCGACCCCAAAGAGGCCTCCCTGAGAGATCCGTCAACATTTTGCGAGCCTGGCTCTTCGAGCATTTTCTTCATCCGTATCCAAGCGACGCTGATAAGCACCTGTTGGCTCGACAGACTGGCCTCTCCAGAAATCAGGTATCAAACTGGTTCATAAATGCCAGGGTGCGGCTGTGGAAACCTATGATAGAAGAAATGTACCAACAAGAACTTAAGGAAGCTGAAGGAGAAGAGAGAGAAGAAAGGAACCAAAGCAGCAGCAACAACCTCCTCGCACAAACTCCAACCACAGCAGCAGCAACTTCAACAGAAGAAGAGCCACCACCATCCACAACAACAACAACGACATTCACAACAGCATCAGCAGGCAAAAGATCCCAAATCAATGCTTCTGATAGCGACCCTTCACTCGTTGCAATCAATAATACCCAACCCTTCTCGGAACCCCAACCAAACCTCTCTTCCTCTGCCATCACCACCACTCCAGCCGCCGCACTTGCCGCCTCCTCTGAGGTGGCGCCACCCTCGTCTCAGTGCTATGACTCTGCAGACCTGCTGATGCCCCCTCACAGATCAATGGCCACAGCAGATGACACGTGTCGCCACGGCAGCCTCATTGCAGCAGATTACGGGACCGCCTCTGGTAACTCTGACATTGGTTCTACTCTCATTAGGTTTGGGACCACCGCCGGTGATGTTTCTCTCACCCTAGGGCTCCGCCACGCTGGCAACATCCCTGAGAAAGCTCATCCTCCTTTCTCCGTTAGAGACTTCGGAGGCATTTGA 2499 0.5126 MHREKKLNKLSIPQKGKRCLRALHPFIPCNSKSTLWVTLRREEEDDEQEDDCNMGIATPPVLPPILSQSGKPHHSFSSIIDSNSMSQDYHQGIFTFERPTTLTQQQQHQLAQQIRRDKVRVQGGLDHPPPPLVGIEEEESGNLPVYETGGMLSEMFNFPPPGATATELLEQQHQPAAPMYRTARPQPQATDWYRQGMLSGLGDSKNQNSRDSTSILEQHHHHHHPQISSMNADSAAAMQLFLMNPQTRSPSPTTQNHTPNSTSLQGFSTQGGGFGPFTWVPHSSQPGAAGGNPPPQIGGVMEAQGLSLSLSSSLQHLEAAKAEELRMGESGFLYYNQGSGGGGSSSSGGGQYPYKTLHFQGSSVVGAGQNHVGFGSSSSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKRNKFTRQNSNPSSNPPPPATAAATGSSSSSKDPPPLSSADRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDMVMGFGSAVPYTALAQKAMSRHFRCLKDAITAQLKQSCELLGEKDGAGSSGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMIEEMYQQELKEAEGEEREERNQSSSNNLLAQTPTTAAATSTEEEPPPSTTTTTTFTTASAGKRSQINASDSDPSLVAINNTQPFSEPQPNLSSSAITTTPAAALAASSEVAPPSSQCYDSADLLMPPHRSMATADDTCRHGSLIAADYGTASGNSDIGSTLIRFGTTAGDVSLTLGLRHAGNIPEKAHPPFSVRDFGGI 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0120 832 SMART prehox3 380 520 IPR006563 -
Alju12g0120 832 MobiDBLite consensus disorder prediction 197 230 - -
Alju12g0120 832 MobiDBLite consensus disorder prediction 414 454 - -
Alju12g0120 832 CDD homeodomain 572 633 IPR001356 GO:0003677
Alju12g0120 832 MobiDBLite consensus disorder prediction 245 278 - -
Alju12g0120 832 Pfam Homeobox KN domain 589 628 IPR008422 GO:0003677|GO:0006355
Alju12g0120 832 SUPERFAMILY Homeodomain-like 574 639 IPR009057 -
Alju12g0120 832 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 245 656 - -
Alju12g0120 832 SMART HOX_1 572 636 IPR001356 GO:0003677
Alju12g0120 832 MobiDBLite consensus disorder prediction 656 727 - -
Alju12g0120 832 Pfam Associated with HOX 385 519 IPR006563 -
Alju12g0120 832 Gene3D - 575 637 - -
Alju12g0120 832 MobiDBLite consensus disorder prediction 642 727 - -
Alju12g0120 832 MobiDBLite consensus disorder prediction 245 272 - -
Alju12g0120 832 Coils Coil 635 655 - -
Alju12g0120 832 FunFam BEL1-like homeodomain protein 4 575 637 - -
Alju12g0120 832 MobiDBLite consensus disorder prediction 430 446 - -
Alju12g0120 832 ProSiteProfiles 'Homeobox' domain profile. 569 632 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0120 Alju-ChrAlju12 1485261 1493227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0120 791 832 Homeobox Transcription Factor Family AT2G23760 67.442 3.80e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Alju12g0120 POX 9.3e-52 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2222 09 45482546 45488056 Alju12g0120 12 1485261 1493227 CCT
Alju12g0120 12 1485261 1493227 Alju12g0120 12 1485261 1493227 ECH
Alju12g0120 12 1485261 1493227 Alju09g2222 09 45482546 45488056 ECH