Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0116 ATGGCTTCTCTGGGCATCCATGCAACTATTTGGCGCTTTGTTTGGACGATAATGATTTTGACCATTTTCGCTGCCAAGCTTAGTCATGCAAAGCAAGAAAAGATGAGTGGTTTAAGAATGAACGTGATTGATCAGTGCTGGAGATTAAACCCAGAATGGAGAAGACACAGAACACAACTTGCCACGTGCTCTGTGGGCTACGCTGGGAAGATGACAAACAACATTGGGAAGGACGTTGTGCACTATAAAGTCACGGATCCAAGTGACGACCCCATTAACCCGAAACCCGGAACCCTGAGATACGGAGCTTCCGTGATCCAAGGCAAAGTCTGGATCACCTTCCAAAGAGACATGCGCATCAGGCTCGCTAGACCCCTCCTCATTAGCAGCTTCACCACCATTGATGCCCGAGGCGTTGATGTCCACATTGCTCATAACTCTTGCTTGATGATTTACAAGGAAACCAACATAATCATCCATGGACTTCGGATCCATCACTGCAAGCCTCAAGGTCCGGGAATGGTGATGGGAGGCGCAGGGAAGGTGATATCTCTGGGTCAAGTAGACGGAGACGCAATCAGATTGGTTTCGGCTTCGAAGATTTGGATCGATCACAACACTCTGTATAGATGCGCAGATGGCCTTCTGGATGTCACAAGAGGTTCCACGGACGTGACGGTGTCCAATAATTGGTTCAGAGATCAAGACAAGGTTATGCTTCTTGGGCACGATGATGGCTACGTGAGAGACCAGAACATGAGGGTCACTGTAGTCTACAACCATTTTGGACCTAATTGCAACCAACGCATGCCCAGGATACGTCATGGATATGCTCATGTAGCTAACAATCTGTACCAAGGATGGATGCAATACGCCATTGGAGGCAGCATGGAGCCCAGCCTCAAAAGTGAAGCTAACCTCTTCATAGCACCAACCTCAGGGAATAAAGAGGTGACGTGGAGAAAAGGTAGCAATGGAAATGAGGAAACATTCGAATTTCATTCAGTGAGGGACGTGTTTGAGAATGGAGCTTCCTTCACTGGAACGAAAGGAGGAAGAGTACCAAAACCTAATTATAACGCAGAACAAGGATTCAAAGTTGCAGATGCTTCATGTGTTAGGCCACTCACTATCTCAGCAGGCGCATTACGATGCAGTAAAACCTCAAGGTGCTGA 1176 0.4745 MASLGIHATIWRFVWTIMILTIFAAKLSHAKQEKMSGLRMNVIDQCWRLNPEWRRHRTQLATCSVGYAGKMTNNIGKDVVHYKVTDPSDDPINPKPGTLRYGASVIQGKVWITFQRDMRIRLARPLLISSFTTIDARGVDVHIAHNSCLMIYKETNIIIHGLRIHHCKPQGPGMVMGGAGKVISLGQVDGDAIRLVSASKIWIDHNTLYRCADGLLDVTRGSTDVTVSNNWFRDQDKVMLLGHDDGYVRDQNMRVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWMQYAIGGSMEPSLKSEANLFIAPTSGNKEVTWRKGSNGNEETFEFHSVRDVFENGASFTGTKGGRVPKPNYNAEQGFKVADASCVRPLTISAGALRCSKTSRC 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0116 391 Pfam Pectate lyase 137 308 IPR002022 -
Alju12g0116 391 SMART amb_all 117 314 IPR002022 -
Alju12g0116 391 Gene3D - 40 384 IPR012334 -
Alju12g0116 391 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Alju12g0116 391 PRINTS Pollen allergen Amb family signature 63 80 IPR018082 -
Alju12g0116 391 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Alju12g0116 391 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Alju12g0116 391 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Alju12g0116 391 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Alju12g0116 391 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Alju12g0116 391 PANTHER PECTATE LYASE 18-RELATED 31 388 IPR045032 GO:0030570
Alju12g0116 391 SUPERFAMILY Pectin lyase-like 39 378 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0116 Alju-ChrAlju12 1430461 1432099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0116 71 323 Polysaccharide Lyase AT5G09280 71.937 6.02e-143 406