Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0113 ATGCTTCAACACGAAGACGGAAAGGACGAGTCATCTTCGACCTTCAACCACTATTCTAGATCCAAGGGGCGAGCCATGGCGAATGGGTTTGGGGAATCGACGAGCACGTCTTCTCAAAGCCCATCTTGCTCAGGGAATGGTTCGAATGATGCTGGGGATTTTGAATGCAATATATGTTTTGATTTAGCACAAGACCCTGTTATCACTCTGTGCGGTCATCTATTTTGTTGGCCATGTCTCTACCGGTGGCTCCATCATCACTCGCATTCTCAAGAATGTCCAGTTTGTAAGGCTCTTGTGCAGGAAGAAAAACTGGTTCCATTATATGGAAGGGGTAAAACACAGACTGATCCCAGAACAAAGTCATATCCTGGAATGGAGATTCCCCGCCGTCCTGCAGGACAGCGGCCTGAAGCACCTCCGGCACCAGAAGCCAATCCATTTGGAAATTATGGGTTTGGATTGATGGGAGGATTTATACCAATGGCAACAGCAAGGATGGGAAATTTCACTCTCTCTACGGCCTTTGGTGGCTTTATCCCATCGCTTCTTAATATTCAATTTCATGGTTTTCCAGATGCCACTGTCTATGGAACAACCTCTGGGTATCCGCTTGGATTTAATGCCTTTCAAGGTGGACATGCCCCTGATTTCGCCCACACAACCGGTCAGGGGAATCGGCATGTGGACAATGTTTTAAAGAATCTCCTTTTGTTGGTTGGTGTACTGGTCCTCCTTGCTCTCATTTTTGGGTAG 756 0.4709 MLQHEDGKDESSSTFNHYSRSKGRAMANGFGESTSTSSQSPSCSGNGSNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVQEEKLVPLYGRGKTQTDPRTKSYPGMEIPRRPAGQRPEAPPAPEANPFGNYGFGLMGGFIPMATARMGNFTLSTAFGGFIPSLLNIQFHGFPDATVYGTTSGYPLGFNAFQGGHAPDFAHTTGQGNRHVDNVLKNLLLLVGVLVLLALIFG 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0113 251 MobiDBLite consensus disorder prediction 111 143 - -
Alju12g0113 251 MobiDBLite consensus disorder prediction 28 46 - -
Alju12g0113 251 ProSitePatterns Zinc finger RING-type signature. 71 80 IPR017907 -
Alju12g0113 251 SMART ring_2 56 96 IPR001841 -
Alju12g0113 251 Pfam Zinc finger, C3HC4 type (RING finger) 55 96 - -
Alju12g0113 251 MobiDBLite consensus disorder prediction 24 46 - -
Alju12g0113 251 CDD RING-HC_AtRMA-like 54 98 - -
Alju12g0113 251 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 39 110 - -
Alju12g0113 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 112 IPR013083 -
Alju12g0113 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 35 246 IPR045103 GO:0005783|GO:0006511|GO:0061630
Alju12g0113 251 SUPERFAMILY RING/U-box 52 109 - -
Alju12g0113 251 ProSiteProfiles Zinc finger RING-type profile. 56 97 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0113 Alju-ChrAlju12 1401980 1405201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0113 46 250 C3H Transcription Factor Family AT2G23780 61.972 2.69e-88 259