Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0093 ATGGCCCTCTTCTCTCACTTATGCCCACCTCCTTCATACTCTCAAATCATCCCTCAACAACAAGGGGAAGAGAAGCGAAGACGACGTCGTAAGAAGGAGAAGAACCAAGGCGAGGGTGCCAATAAGAAGAGGAAGCTGAGTGAGCAGCAAGCGACTCTTCTGGAACTCAACTTCGGTAACGAACATAAATTAGAGTCGGAGAGAAAGGACAGGCTGGCATCGGATCTTGGTCTTGATCCTCGTCAGGTGGCTGTGTGGTTTCAAAACCGAAGGGCCCGATGGAAGAATCAGAAGTTGGAAGAAGCCTACTCCAACCTCAAGAAACTCCAGGAAACCACCCTCCTTGAGAAAAACCACCTTGAAGCTCAGGTGTCGAAGCTAAAGGAGCAGCTTTCGAAAGCAGAGGAGGAGATCCAACGGCTATTAGAGAGGGGTGAGAGATCGGTGTCAAACGATACTACAATGGAAGCTGTGGGGGACCCACTGTTTTTGGGGGAATTCGGAGTCCAAGGTTACGATGACGCCGATGATGTCTTATTATACCCAACAGATCATTACATGAATGGCTTGGAATGGCTCATTTCTTACTTGTGA 594 0.4865 MALFSHLCPPPSYSQIIPQQQGEEKRRRRRKKEKNQGEGANKKRKLSEQQATLLELNFGNEHKLESERKDRLASDLGLDPRQVAVWFQNRRARWKNQKLEEAYSNLKKLQETTLLEKNHLEAQVSKLKEQLSKAEEEIQRLLERGERSVSNDTTMEAVGDPLFLGEFGVQGYDDADDVLLYPTDHYMNGLEWLISYL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0093 197 ProSitePatterns 'Homeobox' domain signature. 72 95 IPR017970 GO:0000981|GO:0006355
Alju12g0093 197 CDD homeodomain 42 98 IPR001356 GO:0003677
Alju12g0093 197 MobiDBLite consensus disorder prediction 1 47 - -
Alju12g0093 197 SMART HOX_1 40 101 IPR001356 GO:0003677
Alju12g0093 197 Pfam Homeodomain 42 96 IPR001356 GO:0003677
Alju12g0093 197 Coils Coil 89 151 - -
Alju12g0093 197 FunFam homeobox-leucine zipper protein ATHB-40 36 105 - -
Alju12g0093 197 SUPERFAMILY Homeodomain-like 41 104 IPR009057 -
Alju12g0093 197 Gene3D - 35 106 - -
Alju12g0093 197 PRINTS Lambda-repressor HTH signature 77 93 IPR000047 GO:0003677
Alju12g0093 197 PRINTS Lambda-repressor HTH signature 68 77 IPR000047 GO:0003677
Alju12g0093 197 ProSiteProfiles 'Homeobox' domain profile. 37 97 IPR001356 GO:0003677
Alju12g0093 197 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 24 149 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0093 Alju-ChrAlju12 1142520 1144123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0093 1 197 Homeobox Transcription Factor Family AT2G18550 49.296 4.27e-61 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Alju12g0093 Homeodomain 8.4e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2241 09 45678101 45679738 Alju12g0093 12 1142520 1144123 CCT
Alju12g0093 12 1142520 1144123 Alju12g0093 12 1142520 1144123 ECH