Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0065 ATGTCTGGTTGCGGCAGCTACGAGGGGCACGTGATGGGAGCGTGCTCATGTGGCATGTATCACAGCCAAACCAATTCATTCCCTATGCTCTACACTACCGACCAAAATTCCTATGCTTATGACTACGACGATTCCGACATGTATTCTTCCTTCACGCCCTCCTCCTCCTCCGTCGACTGCACGCTCTCTCTCGGCACCCCCTCCACGCGTTTGACTCATCACGACGAAGACAGGCGAGGAGGCGGCGGCCGCAGCAGCGAACGACGTCGCTCTGTCTCCAACATGTGCTGGGATTTATTAGAGTCCAATCAATCCCACAGTAGCAATAATAAGTCCGGCAAAGGCGGCTCCTCCTCCTCCAATGATCCTCTTCTCGCTCGTCGATGTGCCAATTGCGACACCACTTCCACGCCCCTTTGGAGAAATGGCCCCAGAGGTCCCAAGTCACTGTGCAATGCCTGTGGGATCAGATACAAGAAGGAAGAGAGGAGAGCCGCCGCCGCAGCCACAGCTTCTGCGTCGTCGGGCGGAGTAATGGAGTCTCAGGCGATGTACGGCCACCAAGACAACTACTGGTACGCGCAGTCGTCGTACTCACAGGGCCAGAGAATGCCATGTTACTCACCGGGAATGGTGGAAGACGGCAACGGAGACTCCGACAACGGCATGGCGGCTTTCCTCTCGTGGAGGCTCAACGTAACGGACAGACCAAGCCTCGTCCATGACTTTACAAGATGA 738 0.561 MSGCGSYEGHVMGACSCGMYHSQTNSFPMLYTTDQNSYAYDYDDSDMYSSFTPSSSSVDCTLSLGTPSTRLTHHDEDRRGGGGRSSERRRSVSNMCWDLLESNQSHSSNNKSGKGGSSSSNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRAAAAATASASSGGVMESQAMYGHQDNYWYAQSSYSQGQRMPCYSPGMVEDGNGDSDNGMAAFLSWRLNVTDRPSLVHDFTR 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0065 245 ProSiteProfiles GATA-type zinc finger domain profile. 123 159 IPR000679 GO:0006355|GO:0043565
Alju12g0065 245 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 126 163 - -
Alju12g0065 245 MobiDBLite consensus disorder prediction 66 90 - -
Alju12g0065 245 Pfam GATA zinc finger 129 163 IPR000679 GO:0006355|GO:0043565
Alju12g0065 245 CDD ZnF_GATA 128 160 IPR000679 GO:0006355|GO:0043565
Alju12g0065 245 MobiDBLite consensus disorder prediction 103 122 - -
Alju12g0065 245 PANTHER GATA TRANSCRIPTION FACTOR 18 12 245 IPR044272 GO:0003700|GO:0009908
Alju12g0065 245 MobiDBLite consensus disorder prediction 70 86 - -
Alju12g0065 245 Gene3D - 125 184 IPR013088 GO:0006355|GO:0008270
Alju12g0065 245 SMART GATA_3 123 175 IPR000679 GO:0006355|GO:0043565
Alju12g0065 245 ProSitePatterns GATA-type zinc finger domain. 129 154 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0065 Alju-ChrAlju12 880361 881219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0065 4 245 C2C2-Gata Transcription Factor Family AT3G50870 41.115 7.70e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Alju12g0065 GATA 6.8e-18 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2291 09 46054835 46060529 Alju12g0065 12 880361 881219 CCT
Alju12g0065 12 880361 881219 Alju12g0065 12 880361 881219 ECH