Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0062 ATGGAAGAACACAGTCATCACCAAGGTAAGAAAATAGATCAGAATTATGATGATGACGACAATCACCCCAAAAGAGATTATTCTTCTTCGGAACAACACCATCATCTTTATCTTCCTCCTCCGTCGAATCAACTACAAAGTGATCCATATGGAAGCTTAACGATCGTGAAGTACAGAGAATGTATGAAGAATCACGCAGCGATCATGGGGAGTCATGTTGTGGATGGATGTGGAGAGTTCATGCCAAACGGAGAAGAAGACACCCCGGAATCTTTAAGATGTGCTGCTTGTGGATGCCACCGGAATTTTCATCGGAAAGAAACACAAGGTAAGCCAGAACCACAACGTATTTTTTCTGATTATTATTACACCTATTATTATTCCAACAAAAGCAACGATCGACAACCACATAGAATTGCTCCTCCTCCTTTAGTCGTCCCTTCTTCTCTTCATCATCAACATAATAGATTGATTAATCCACCAATGATGGTGGCCTACGGAGGAGGAGAACCGGTGGATTCCTCCGGCGAAGGGCGGCCGCAGCCGGCATCAATGTCGAAGACGACCAAGAGGTTTAGGACAAAGTTCACACAAGAACAGAAGAGGAGGATGATGGAATATGCAGAGGAGATTGGGTGGAAGATCCAGAATAATGAGGAACAACAAGTACGGCAATTCTGTTCTCAGGTGGGAGTGAATAGGCAGGTTTTCAAGATTTGGATGCACAACAACAAGCAAAGGACCAAGCTGCACCAAGTGTAA 762 0.4396 MEEHSHHQGKKIDQNYDDDDNHPKRDYSSSEQHHHLYLPPPSNQLQSDPYGSLTIVKYRECMKNHAAIMGSHVVDGCGEFMPNGEEDTPESLRCAACGCHRNFHRKETQGKPEPQRIFSDYYYTYYYSNKSNDRQPHRIAPPPLVVPSSLHHQHNRLINPPMMVAYGGGEPVDSSGEGRPQPASMSKTTKRFRTKFTQEQKRRMMEYAEEIGWKIQNNEEQQVRQFCSQVGVNRQVFKIWMHNNKQRTKLHQV 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0062 253 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 31 246 - -
Alju12g0062 253 MobiDBLite consensus disorder prediction 170 190 - -
Alju12g0062 253 Gene3D - 174 249 - -
Alju12g0062 253 SUPERFAMILY Homeodomain-like 175 249 IPR009057 -
Alju12g0062 253 MobiDBLite consensus disorder prediction 1 48 - -
Alju12g0062 253 MobiDBLite consensus disorder prediction 1 32 - -
Alju12g0062 253 FunFam Zinc-finger homeodomain protein 2 177 250 - -
Alju12g0062 253 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 57 107 IPR006456 -
Alju12g0062 253 NCBIfam homeobox domain, ZF-HD class 190 246 IPR006455 -
Alju12g0062 253 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 107 IPR006456 -
Alju12g0062 253 Pfam ZF-HD protein dimerisation region 56 108 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0062 Alju-ChrAlju12 838208 838969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0062 56 253 ZF-HD Transcription Factor Family AT4G24660 44.444 1.72e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Alju12g0062 ZF-HD_dimer 6.2e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2301 09 46115380 46116303 Alju12g0062 12 838208 838969 CCT
Alju12g0062 12 838208 838969 Alju12g0062 12 838208 838969 ECH
Alju12g0062 12 838208 838969 Alju09g2301 09 46115380 46116303 ECH