Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0060 ATGGCATCATCGTCGTGGACTCCGAGGCAAAACAAACTGTTTGAACGAGCTCTTGCTTTGTACGATAGGGAAACACCTGACAGGTGGCAGAATGTTGCCAGAGAGGTTGGAAAATCAGTGGAGGATGTCAAAAGGCACTATGAGATCCTCAAAGAAGATGTCAAACGCATAGAGCATGGTCAAGTCCCCTACCCCTACTTCAGTACTAAATACTAA 216 0.4583 MASSSWTPRQNKLFERALALYDRETPDRWQNVAREVGKSVEDVKRHYEILKEDVKRIEHGQVPYPYFSTKY 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0060 71 ProSiteProfiles SANT domain profile. 1 55 IPR017884 -
Alju12g0060 71 SUPERFAMILY Homeodomain-like 4 58 IPR009057 -
Alju12g0060 71 Gene3D - 1 64 - -
Alju12g0060 71 SMART sant 2 53 IPR001005 -
Alju12g0060 71 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 69 IPR044636 GO:0003700
Alju12g0060 71 CDD SANT 5 51 IPR001005 -
Alju12g0060 71 FunFam Transcription factor SRM1 1 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0060 Alju-ChrAlju12 826005 826220 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Alju12g0060 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju12g0060 12 826005 826220 Alju09g2304 09 46140416 46141072 ECH
Alju02g2019 02 19481986 19482510 Alju12g0060 12 826005 826220 ECH
Alju12g0060 12 826005 826220 Alju12g0060 12 826005 826220 ECH
Alju09g2304 09 46140416 46141072 Alju12g0060 12 826005 826220 ECH