Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0059 ATGGGAACTGATCGTGGTGTAGTAGAGCCAGTACCAAATATCCGCTCCTTTAAGGTCCATCGTAAAATGTGCACAGAGCTAATGAAATTAGTTGATAGAATCTCTAGGATATTCCCAGATATTGAGGCAGCACGTCCTCGATGCTCATCAGGAATACAATCTCTGTGCTTGCTAAACAATGCAGTTGATAAAGCCAAACTTCTTCTGCAGCATTGCTGTGAGTCTAGCAAACTCTACCTGGCTGTGACGGGAGATACGGTACTCTCAAGATTCCAAAAAGCAAGAAAATCATTGGAGCAAAGCTTAAGCCAAGTTCAGAGCATAGTTCCAGTTATGCTGGCTGCAGAGATTTCTCAAATAATTGATAATCTTGCATGCATGACTATTGTATTGGATTCAGCTGAAGAAGAGGCCGGGAGGGTTGTAAAGGAATTACTTCAGCAAGGTGCTTCAACCTCAGACTCTATTGAAAATTCTGAAATTAAAGCTCTTCAGTTTGCTGCAGCAAGACTTAACATCACATCCCCAAAGGTCATCTTAATAGAGAAACGATCTATTAAGAAGTTGCTAGATAAAGTTGGACCTAACGATCAGACAAAAAAGATGATCTTGAGATATCTCTTGTATCTATTGAAGAAGTATGGTAACCATATCACAGGAGAACAGAATGAAGCGGTCTATTCTTATGGTGATGGACCAATTGTACCTGAGAACCACAGTCTTCATTCTCAACATATCCATTATGTTGAACCAGAAAGATGCTTTAATTATGATCGGTTTGAAACTCACGACAGTGAGATGGGTAGAGCAGAACCGCCAGAGGAATACAAATGTCCAATATCTTCAAGATTAATGTATGATCCTGTTGTTATTGCTTCTGGAGCAACATATGAAAGAATGTGGATTCAAAAGTGGTTTGATGATGGCAATGATACATGTCCAAAAACCGGGAAGAAACTGGCCCATATGTCGTTGACTCCAAACACTGTTATGAAGGACTTAATATCAAAGTGGTGCAGAAATAATGGAGTGACACTAGCTGAACCACAAAAGCTAGCAAAAGAATTTCACTCGTGGGAGGTTTCTTCAACTTCCATTAGGAGCTTTGGCAGTTCTATGAATGATCTGCACTTGCCAGTAGATCTTAGCAGCATGTCACTTGGATCATTAGAATATAGTCAAGGTTCTGATTCCTTACATGCTAGGAACACTAATGACTTAAATTTGACGCCAAAGAAGGCCAATGACAATTCTTGGAGTCATCAACTTAACGTGCATGTGCATGACACCGATCTGATCACTTTGTCTAAATTCCACGACCTTGAATGGGATTCTCAATGCCAGGCCATTAAAGATCTGAAAGATCGTTTGAAATGCAATTGCCAAGCTTCTTGTTCTCTGCCTTCTGAAAAGTTTGTTGAACTCCTCAACAGATTTTTGAGCAGTGCATATGAACATCAAGATGTCAAAGCTCTGAGAACAGGAACTCAGTTATTAATGGAATTTGTGAATGACTGCGGAAAGGATCTGTCCTATTTAAGAGAAGACACATTTAGCATGTTGGGAAGTTTCCTTGATTTGGAAGTGATGGGTGAAGCTCTTTCTATAATGGAAAAACTATCTGCAAATCATCACAACAAAGCTACAATTGCAACATCCAGTGTGCTCACTTCCATCCTAAAGATCCTGGACTCTGACAGCAGAGAGTTCCAAGAACAAGTTATCAGAATATTGTATAATCTGTCTTTCAACAGTGAGAATTGCTCCCAAATGGCATCTCTTGGGTGCATCCCAAAATTGCTGCCCTATTTCGAGGACCAGACCCTTTTAAGATACTGTATATGTATGTTGAAAAACCTTGGTGATATTGAGGTGGGCAGGGTTTCTATTGCGGGAACTAATGGATGCATAGCTTCAGTTGCTGAGATACTTGACACTGGCAGTGTTGAGGAACAGGAGCATGCACTTTCTGTTTTACTCTCTTTATGCTCTCAGCGTGAGGATTATTGTCAGTTGGTCATGTATGAGGGTGTTATCCCTTCTCTCGTCACTATGTCCATCAATGGAAGTGACAATGGAAAGGTGAGTGCATTGGAATTGCTTCGTCTTCTGGGGGATGTTCAATATGAAGAAGAGTCCATGAAGCCAAGATGTGAAACTCAAGATTCTAATGATTATTCCCAAGAAAAGAAACCGTCGAAGACCTCTGGTTTTCTGAAGAAACTATCACCATTCTCAAAAAGTAAGAGGTAA 2253 0.4035 MGTDRGVVEPVPNIRSFKVHRKMCTELMKLVDRISRIFPDIEAARPRCSSGIQSLCLLNNAVDKAKLLLQHCCESSKLYLAVTGDTVLSRFQKARKSLEQSLSQVQSIVPVMLAAEISQIIDNLACMTIVLDSAEEEAGRVVKELLQQGASTSDSIENSEIKALQFAAARLNITSPKVILIEKRSIKKLLDKVGPNDQTKKMILRYLLYLLKKYGNHITGEQNEAVYSYGDGPIVPENHSLHSQHIHYVEPERCFNYDRFETHDSEMGRAEPPEEYKCPISSRLMYDPVVIASGATYERMWIQKWFDDGNDTCPKTGKKLAHMSLTPNTVMKDLISKWCRNNGVTLAEPQKLAKEFHSWEVSSTSIRSFGSSMNDLHLPVDLSSMSLGSLEYSQGSDSLHARNTNDLNLTPKKANDNSWSHQLNVHVHDTDLITLSKFHDLEWDSQCQAIKDLKDRLKCNCQASCSLPSEKFVELLNRFLSSAYEHQDVKALRTGTQLLMEFVNDCGKDLSYLREDTFSMLGSFLDLEVMGEALSIMEKLSANHHNKATIATSSVLTSILKILDSDSREFQEQVIRILYNLSFNSENCSQMASLGCIPKLLPYFEDQTLLRYCICMLKNLGDIEVGRVSIAGTNGCIASVAEILDTGSVEEQEHALSVLLSLCSQREDYCQLVMYEGVIPSLVTMSINGSDNGKVSALELLRLLGDVQYEEESMKPRCETQDSNDYSQEKKPSKTSGFLKKLSPFSKSKR 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0059 750 Pfam U-box domain 273 342 IPR003613 GO:0004842|GO:0016567
Alju12g0059 750 SUPERFAMILY RING/U-box 261 346 - -
Alju12g0059 750 FunFam RING-type E3 ubiquitin transferase 271 345 - -
Alju12g0059 750 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 346 IPR013083 -
Alju12g0059 750 MobiDBLite consensus disorder prediction 711 750 - -
Alju12g0059 750 SUPERFAMILY ARM repeat 485 704 IPR016024 -
Alju12g0059 750 SMART arm_5 543 583 IPR000225 GO:0005515
Alju12g0059 750 SMART arm_5 666 706 IPR000225 GO:0005515
Alju12g0059 750 SMART arm_5 584 622 IPR000225 GO:0005515
Alju12g0059 750 SMART Ubox_2 275 338 IPR003613 GO:0004842|GO:0016567
Alju12g0059 750 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842|GO:0016567
Alju12g0059 750 PANTHER U BOX DOMAIN-CONTAINING 22 713 - -
Alju12g0059 750 Pfam Kinesin-associated protein (KAP) 490 653 - -
Alju12g0059 750 Gene3D - 437 721 IPR011989 -
Alju12g0059 750 CDD RING-Ubox_PUB 273 325 IPR045210 -
Alju12g0059 750 MobiDBLite consensus disorder prediction 711 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0059 Alju-ChrAlju12 812805 815975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0059 18 748 U-box Gene Family AT1G24330 32.932 4.52e-115 363
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2306 09 46165533 46168593 Alju12g0059 12 812805 815975 CCT
Alju12g0059 12 812805 815975 Alju12g0059 12 812805 815975 ECH
Alju12g0059 12 812805 815975 Alju09g2306 09 46165533 46168593 ECH