Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0056 ATGCTTCTCCCATTTTTTTTCCTGGATCCGGACTCTGCAGCCTTCCATTTTGATCTCTTGTGTGCCCGCTTGAACATTCTCTGCGATTTTCCTGTTTTTGTGTTGGAAGGGAAATTGATATGCTTTGCAAACATGTCATTTAAAAGCATAGTTCGTGAGTTTAAGGAAATGAGAGATGGAATGAGCAACGTGTCAAAGCGAGGCGTAGAACGTAAGCGATGGCATAGTCGAAAAGCAAAATCACACATTGCTCCAGATGTCACCCTACCTCCAGTTGATCCTATTCAACAAGGACTGTGGGCAAATCTGCCTCCAGAACTGCTTTTGGACATCATTCGGAGGGTGGAAGATTGCGAGACAACATGGCCTGCGCGGGCTGTCGTTGTTTCCTGTGCTTCAGTATGTAAATCGTGGAGAGCCATTACAAAGGAAATCGTCAAGCCTCCTGAGCAATCTGGGAGGCTCACATTTCCTGTCTCAGTGAAGCAGCCCGGTCCTCGTGATGCACCAATACAGTGCTTTATCAGGAGGAACAGAGAAACTTCTACATATTACTTGTATTTTGGTCTTGCGCCATCGGAAAATGAGCGAACCAAGTTGTTATTAGCTGCAAAAAAGATAAGAAAACCAACCGCCACAGAGTTTGTTATATCCTTTATTGCAGATGATTTTTCTCGGGCCAGCAGCACATATCTTGGTAAATTGAGGTCCAATTTTTTGGGAACCAAGTTTGCCATATATGATAGCCAACCTCCACTGAAAGCTAGCATTCAAAAGAATAATCATTCTAGTAATAAGTTCCACTCAAAGCAGCTATCTCCCAAAATACCAGGGCGCAAACATAATGTTGCCACCATCGGTTATGAACTCAATGTTCTTCGCACAAGAGGTCCGAGAAGAATGCACTGCATTTTGAACTCCATACCTATGTCGGTTATTCAGGAAGGAGGCAATGCCCCAACGCCAACAACCCTTCCGCAATTTTCTTCCTCACCAGCACCGAAAGGGAAAGATTCAACTCCAGATTTAAACTCAGCAAACTTACTAGATCCACTGGCATCGAGTCAGGGCTTGGTTGAGCCTCTTGTTCTTAAAAACAAGGCTCCCAGATGGCACGAGCAACTGCAGTGCTGGTGCCTAAATTTCAAGGGCCGTGTCACGGTGGCTTCTGTGAAGAATTTCCAGCTTTGTGCTGCTGTTGATCCGTCTCATGATGTTCCTGCTGCAGAACAAGAGAAGGTGATCTTGCAGTTTGGGAAGATTGGTAAAGACATATTCACTATGGACTACCGGTATCCTCTCTCAGCTTTTCAAGCCTTTGCCATATGCTTGAGCAGTTTCGATACTAAACCGGCGTGTGAATGA 1365 0.4498 MLLPFFFLDPDSAAFHFDLLCARLNILCDFPVFVLEGKLICFANMSFKSIVREFKEMRDGMSNVSKRGVERKRWHSRKAKSHIAPDVTLPPVDPIQQGLWANLPPELLLDIIRRVEDCETTWPARAVVVSCASVCKSWRAITKEIVKPPEQSGRLTFPVSVKQPGPRDAPIQCFIRRNRETSTYYLYFGLAPSENERTKLLLAAKKIRKPTATEFVISFIADDFSRASSTYLGKLRSNFLGTKFAIYDSQPPLKASIQKNNHSSNKFHSKQLSPKIPGRKHNVATIGYELNVLRTRGPRRMHCILNSIPMSVIQEGGNAPTPTTLPQFSSSPAPKGKDSTPDLNSANLLDPLASSQGLVEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLCAAVDPSHDVPAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0056 454 Gene3D Tubby Protein; Chain A 157 454 IPR025659 -
Alju12g0056 454 SUPERFAMILY F-box domain 94 143 IPR036047 GO:0005515
Alju12g0056 454 ProSitePatterns Tub family signature 1. 382 395 IPR018066 -
Alju12g0056 454 Gene3D - 96 145 - -
Alju12g0056 454 PANTHER TUBBY-RELATED 76 452 - -
Alju12g0056 454 SUPERFAMILY Tubby C-terminal domain-like 149 454 IPR025659 -
Alju12g0056 454 ProSitePatterns Tub family signature 2. 439 454 IPR018066 -
Alju12g0056 454 PRINTS Tubby superfamily signature 364 381 IPR000007 -
Alju12g0056 454 PRINTS Tubby superfamily signature 411 430 IPR000007 -
Alju12g0056 454 PRINTS Tubby superfamily signature 231 255 IPR000007 -
Alju12g0056 454 PRINTS Tubby superfamily signature 280 307 IPR000007 -
Alju12g0056 454 PRINTS Tubby superfamily signature 432 454 IPR000007 -
Alju12g0056 454 PRINTS Tubby superfamily signature 215 231 IPR000007 -
Alju12g0056 454 PRINTS Tubby superfamily signature 382 398 IPR000007 -
Alju12g0056 454 Pfam F-box domain 100 146 IPR001810 GO:0005515
Alju12g0056 454 MobiDBLite consensus disorder prediction 315 343 - -
Alju12g0056 454 CDD F-box_AtTLP-like 100 144 - -
Alju12g0056 454 Pfam Tub family 161 449 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0056 Alju-ChrAlju12 804952 807687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0056 45 454 TUB Transcription Factor Family AT2G18280 63.484 0.0 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Alju12g0056 Tub 8.2e-105 CL0395