Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0023 ATGGGTCGGGGAAAGATTGAGATCAAGTTGATTGAGAATGCCACCAACAGGCAGGTCACCTACTCCAAACGGCGCAATGGCATTTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCTAAGGTTTCCCTCATCATGTTCTCCAAAAACAATAAGATGCATGAATACACCACTCCTGGCTTTACGACAAAGAATATAATAGATCAGTACGAGAGGAGTTTGGGGAATATCGATCTCTGGAGTTCCCAATACGAGAGGATGCTCGAAACCATGAGGAAGCTGAAGGATAGTAACAATAAACTCAGAAGACAGATAAGGCAGAGGATGGGTGAGGATTTAAATGATCTGGACTTCCAGCAACTACGCAGTCTTGAGGAGGATATAGTTTCTGCCTCAGCGATCATACGCGAACGAAAGCTTCATGTGATCAAAACTCGGACTAGTACCAGTAAGAAAAAGGTGAAAAGCATGGAGCAGATGAACGAGAATCTGCTGCTTGAACTTGAAAAGTGTGTGATCCATTCACAATATCTGGTGCACGAGGAAGGAGATCAGGAATCAGCAGTTACAGTGGCCACAGGTGTCTCCAACTTCCATGGACTGTGCCACCCGCAGCACCCTACCCACATGAATCTTCATCATAATGGAATGGGATTGAGATCAGAAGATCTGCGCCTTGCTTGA 687 0.4512 MGRGKIEIKLIENATNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYTTPGFTTKNIIDQYERSLGNIDLWSSQYERMLETMRKLKDSNNKLRRQIRQRMGEDLNDLDFQQLRSLEEDIVSASAIIRERKLHVIKTRTSTSKKKVKSMEQMNENLLLELEKCVIHSQYLVHEEGDQESAVTVATGVSNFHGLCHPQHPTHMNLHHNGMGLRSEDLRLA 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0023 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 183 - -
Alju12g0023 228 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Alju12g0023 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju12g0023 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju12g0023 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju12g0023 228 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Alju12g0023 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju12g0023 228 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju12g0023 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Alju12g0023 228 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Alju12g0023 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju12g0023 228 Pfam K-box region 82 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju12g0023 228 Coils Coil 85 112 - -
Alju12g0023 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0023 Alju-ChrAlju12 393302 394730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0023 1 210 MADS-box Gene Family AT3G54340 50.463 1.22e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju12g0023 K-box 5.1e-17 No_clan