Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0014 ATGAGAACGCTTTGTGACGCTTGTGAGAGCGCCGCCGCCATCGTTTTCTGCGCCGCCGATGAGGCCGCTCTCTGCCGTGCCTGTGACGAGAAGGTTCATATGTGTAATAAGCTAGCTAGCCGGCATGTAAGGGTTGGTCTGGCAAGTCCTAGTGATGTGCCTCGCTGTGACATATGTGAAAATGCACCTGCATTCTTCTATTGCGAGACGGATGGAAGTTCACTTTGCTTGCAGTGTGATATGATGGTTCATGTTGGGGGTAAAAGAACACACGGAAGATATCTTCTTTTTAGGCAGAGAGTTGAGTTTCCAGGAGATAAAACTGGTCTCCCGGAAAACTCAGCTTCACTGCCTCTGGAACCTGGTGAGACTAAAAGAGGACAAAATCATCTGCCTAAAGTGAAAGTGGGGGAGAGACAACAAAATCATAGGTTAGCTCTGGCTGCAGCACCTGAACATGATGCTGACGGCCAAGCCATGATGGAAACTAACATGATTGATTTGAACATGAAGCCTCAGAGAATACATGAACAAGCTTCCAATAATCAGCCATAA 555 0.4739 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMMVHVGGKRTHGRYLLFRQRVEFPGDKTGLPENSASLPLEPGETKRGQNHLPKVKVGERQQNHRLALAAAPEHDADGQAMMETNMIDLNMKPQRIHEQASNNQP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0014 184 Gene3D Classic Zinc Finger 2 91 - -
Alju12g0014 184 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Alju12g0014 184 SMART bboxneu5 51 96 IPR000315 GO:0008270
Alju12g0014 184 SMART bboxneu5 1 47 IPR000315 GO:0008270
Alju12g0014 184 CDD Bbox1_BBX-like 56 96 - -
Alju12g0014 184 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 136 - -
Alju12g0014 184 FunFam B-box zinc finger protein 19 2 92 - -
Alju12g0014 184 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Alju12g0014 184 CDD Bbox1_BBX-like 4 47 - -
Alju12g0014 184 MobiDBLite consensus disorder prediction 107 129 - -
Alju12g0014 184 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Alju12g0014 184 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Alju12g0014 184 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0014 Alju-ChrAlju12 276967 278926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0014 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 63.388 2.70e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Alju12g0014 zf-B_box 1.8e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2360 09 46620338 46622437 Alju12g0014 12 276967 278926 CCT
Alju12g0014 12 276967 278926 Alju09g2360 09 46620338 46622437 ECH
Alju12g0014 12 276967 278926 Alju12g0014 12 276967 278926 ECH