Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g2058 ATGATATTGAGCAAGGTTGTGTTTGGGGATCTGACCAAGTATGGATTGCCTTGGCCTAGTGAGGGTCCTTTCACTATGAAGCTGCGGTACGGCAAGTTCCCTATAATTGATGTAGGAACCATCCAGGTATTGACTATTAACAATGATGAGGGAAAAGAGATTCCAAGGGATGACAGCTTACTCTAAGGAGTCAAGATACATCCTCCTAGTCTTGGAGTGCATTCTTCTAGAATGGTGTTACCACTGCAAATGGAAGAAGAACCTGTGTATGTTAATGCCAAGCAATACCATGGAATTTTGAGGCGTAGGCAATCTCGTGCCAAGGCTGAGCTTGAAAAGAAGGTTATAAAAGTGAGGAAGGTAATGTCTCATTTCCAGAAATATTTGATTTGA 393 0.4198 MILSKVVFGDLTKYGLPWPSEGPFTMKLRYGKFPIIDVGTIQVLTINNDEGKEIPRDDSLLXGVKIHPPSLGVHSSRMVLPLQMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKVMSHFQKYLI 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g2058 130 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 87 124 IPR001289 GO:0003700|GO:0006355
Alju11g2058 130 ProSitePatterns NF-YA/HAP2 subunit signature. 90 110 IPR018362 GO:0003677|GO:0016602
Alju11g2058 130 Gene3D - 85 130 - -
Alju11g2058 130 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 68 129 IPR001289 GO:0003700|GO:0006355
Alju11g2058 130 ProSiteProfiles NF-YA/HAP2 family profile. 85 130 IPR001289 GO:0003700|GO:0006355
Alju11g2058 130 SMART cbf3 84 128 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g2058 Alju-ChrAlju11 42017143 42018419 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g2058 69 128 CCAAT-HAP2 Transcription Factor Family AT5G12840 61.667 6.60e-18 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Alju11g2058 CBFB_NFYA 2.5e-11 No_clan