Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g2040 ATGCATGTAATCTTATTCAGGATGATTGATACTTATAATACGAACAAGGAGTGGGCAAATGCAGCAGTAGATAATGGCAGAGCAGTTAGGAAGGAAGGAGTAGATGAGCCCCATAACCCATACACCTCTCTCTATTTATTGCTCACATCACACAATTCCATTGCAACAGCCTTGCCTATTCTGAACTGCCCTTTCTTCTCTTTTCCTTTCACCTTGCTGTTGATTGACATGGACGATGAGGAAGAAGTAGTCCACAAGGTTGGAGGAGCAGGAGAATGCCGAGTTTTCCAATGTCAGTTCTGTTCAAGAAAGTTTTACAGTTCTCAAGCTTTGGGAGGACACCAAAATGGCCACAGAAAAGAGAGAACGGCTGCTAGAAAGGCTAAAAGGGCAGCATTTGAGTGCTCTTCTTTTGCTTCTTCTCTTGTGTCTCCAATAATGCCTTTTGGAGCTGCCACCCATCAAATGGCTCTTCTGAATCCTTCCATGTTCCTCGCTTCAAATCTTGGTTACGTCCAAAGGCACCAGATGTTTGACCATTTTGGAGCCAACGTTGGGCCTAGGAATGCTCTGTTTTGTGAACAAGTTGAGGAGAGAGGGCTGGGGAATTGGCGCAGCAACATGGCATTGACAAGAAGGGACGATCAGGGCATTGGCGTAGTGAATCATTGTAAAGAGAAAGATCAAAATCTTGATTTGACTCTTCATCTATAG 714 0.4426 MHVILFRMIDTYNTNKEWANAAVDNGRAVRKEGVDEPHNPYTSLYLLLTSHNSIATALPILNCPFFSFPFTLLLIDMDDEEEVVHKVGGAGECRVFQCQFCSRKFYSSQALGGHQNGHRKERTAARKAKRAAFECSSFASSLVSPIMPFGAATHQMALLNPSMFLASNLGYVQRHQMFDHFGANVGPRNALFCEQVEERGLGNWRSNMALTRRDDQGIGVVNHCKEKDQNLDLTLHL 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g2040 237 SUPERFAMILY beta-beta-alpha zinc fingers 94 123 IPR036236 -
Alju11g2040 237 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Alju11g2040 237 PANTHER ZINC FINGER PROTEIN JAGGED 92 237 IPR045320 GO:0003700
Alju11g2040 237 Gene3D Classic Zinc Finger 76 141 - -
Alju11g2040 237 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g2040 Alju-ChrAlju11 41828760 41830557 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g2040 72 149 C2H2 Transcription Factor Family AT5G25160 44.304 1.46e-16 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju11g2040 None None None