Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g2039 ATGGAAACAGGTCCCTTGGCATTCTTGGCCTCCCATTCCTCCTTCTCCTCAGTTTCAGTTGGAGCAACAAAGACAAATACAATGCAGAAGATCTGTGTTTGTGTCCAATTCTTGGCCCTCGCCTCTCTGCTTCTGCCCCTGCTTTTCCCTTCCGCCATCGCCCACAGGTTCAATGATTCTTCCAATGAGCATGCAGTGAAAAATCCTGAGGAGATAGCCTCTACGGTTCATATGAGTATACGCAATCATACGGAAAGAAGGAATTTGGGTTTCTTCTCTTGTACGACCGGGAATCCCATCGACGACTGCTGGCGCTGTGACCGCTACTGGCAGCGCCACCGCAAACAGCTGGCCAATTGCGCCATAGGGTTTGGACGCAATGCCATCGGAGGCCGAGACGGAAAGTACTACGTCGTGACTGACCCCAGCGACGACGACGCCGTCAACCCAAAACCAGGCACCCTCCGCCACGCCGTCATCCAAGACGACCCCTTATGGATCGTGTTCAAAAGGGACATGGTCATCACCCTCAAGCAAGAGCTCATCATGAACAGCTTCAAGACCATCGACGGCCGCGGCGTCAACGTCCACATTGCTTATGGGGCCTGCATCACCATCCAATTCATCACCAACGTCATCATCCACGGCCTCCACATCCATGACTGCAAGCAAACCGGCAACGCCATGGTCCGTAGCTCGCCGTCGCATTACGGATGGAGGACCCTGGCCGACGGAGACGGGATTTCCATCTTCGGTTCGAGCCACATCTGGATCGATCACAACTCACTCTCTAAATGCTCAGATGGTCTTATTGATGCCATCATGGGTTCAACTGCCATTACCATCTCCAACAATTACTTCACTCACCACAATGAGGTCATGCTTTTGGGTCACAGTGACTCTTACGTCAGAGATAAGCAGATGCAAGTGACCATTGCCTACAACCATTTTGGGGAGGGCCTTATTCAGAGAATGCCAAGGTGCAGACACGGGTATTTCCATGTGGTAAACAATGACTACACTCACTGGGAAATGTATGCAATTGGTGGTAGTGCAGATCCCACCATTAACAGCCAGGGAAATCGATACCTTGCCCCTCAGAACACTTTTGCTAAGGAGGTGACAAAGAGAGTTGACACAGGTGAAGGAGTGTGGAAAAGTTGGAACTGGAGGTCAGAGGGAGACCTTTTGCTGAATGGTGCCTTCTTCACTTCATCAGGTGCTGGCTCTGGAGCTAGCTATGCCAGAGCTTCAAGTTTATCGGCCAAATCGTCTTCCTTGGTTGGTACCCTCACCTCTGGTGCCGGTGTTCTTAGCTGCCAGAGGGGTTCTATGTGTTAA 1341 0.5145 METGPLAFLASHSSFSSVSVGATKTNTMQKICVCVQFLALASLLLPLLFPSAIAHRFNDSSNEHAVKNPEEIASTVHMSIRNHTERRNLGFFSCTTGNPIDDCWRCDRYWQRHRKQLANCAIGFGRNAIGGRDGKYYVVTDPSDDDAVNPKPGTLRHAVIQDDPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQFITNVIIHGLHIHDCKQTGNAMVRSSPSHYGWRTLADGDGISIFGSSHIWIDHNSLSKCSDGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPQNTFAKEVTKRVDTGEGVWKSWNWRSEGDLLLNGAFFTSSGAGSGASYARASSLSAKSSSLVGTLTSGAGVLSCQRGSMC 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g2039 446 Gene3D - 97 439 IPR012334 -
Alju11g2039 446 PANTHER PECTATE LYASE 18-RELATED 63 444 IPR045032 GO:0030570
Alju11g2039 446 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Alju11g2039 446 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Alju11g2039 446 PRINTS Pollen allergen Amb family signature 417 440 IPR018082 -
Alju11g2039 446 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Alju11g2039 446 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Alju11g2039 446 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Alju11g2039 446 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Alju11g2039 446 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Alju11g2039 446 SMART amb_all 172 369 IPR002022 -
Alju11g2039 446 SUPERFAMILY Pectin lyase-like 75 440 IPR011050 -
Alju11g2039 446 FunFam Pectate lyase 97 439 - -
Alju11g2039 446 Pfam Pectate lyase 181 361 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g2039 Alju-ChrAlju11 41810563 41813936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g2039 63 446 Polysaccharide Lyase AT4G13710 78.920 0.0 668