Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g2019 ATGGCTGAATTGAAATCAGAGGAGTGTTGCCTAGAGAATAAGCAATCTACTGCTGCCTCTACCTCCTCTATCTCAGAAGGCAGTGCCAGTGCGATACACAAGTCCCCTGGAAGATGTAGCCCTGCATCAGTATCGCCCTCTCATCGGAGGACCACTGGCCCCATCAGGCGTGCAAAGGGTGGCTGGACAGCCCAGGAGGATGAGACATTGAGGAATGCTGTTGCAACTTTCAAGGGCAAGAGTTGGAAGAAAATAGCTGAATATTTTCCTGATAGATCAGAAGTGCAATGTCTGCATAGATGGCAGAAGGTTCTTAATCCTGAACTTGTTAAAGGCCCTTGGACTCCTGAGGAGGATGACAAAATTGTTGAACTGGTGTCAAAATATGGGCCAGCAAAATGGTCTATGATAGCCAAATCTCTGCCTGGTCGCATTGGGAAACAGTGTCGAGAGCGATGGCACAATCATCTTAATCCTGAAATAAAGAAGGATGCCTGGACTTTGGAGGAGGAACTGTCCCTCATGAATGCTCATCGCATACATGGGAACAAATGGGCTGAAATAGCTAAGGTTTTGCCTGGAAGGACTGATAATGCAATAAAGAACCACTGGAATAGTTCATTGAAGAAAAAATTAGAATTTTATTTAGCTACAGGAAACCTTCCGCCAATCCAAAAGAACAGTGCACAAGGTGGTGTGAAAGATACAATAAGACGCCCTGCTAGTAAAACAGTACATGCTTTCTCAAATAAAGTAGTAGATACAGCTGCTGATACATCATCAGAAAATACAGACAATACTAAAGATGGCAGTGTAAAGAATCAACTAGAGTCCTTGGCAACAGTGAGGGAGTTTGGTAATTCTATGAGCGTTCCTGCAAATGAAGGTGCTGATTCTGACTTTGTAGAATGGAAGCCCAGATCATCCAATCTAGATCTTAGCTACAGCAACTCAGAATCAGTGTCAAGGGATAATTTTGGATTGACCAGTGACCTAAAATTTGATAACACTGGACTTAATGGCAAGCATACGGTTGGGAATTTTGTGAGTACTGGTGAAGTAAGCAGTAGCAGGCTAATTAGTACATCTTTTTCACTGGATAGTCCACCCTCTGGTTCTTTGTGTTATGAGCCTCCGTTGTTGGAGAGCTCAGTTCCTTTGGATTCCGTTTATTTAAGTATGTATTGCCTGCAGAACGAGTACAATGCTACTCCAGTGATGTCACCTGTTGGTTTCTTCACTCCACCTTGTGTGAAGGGTAGTGAAATATGCACAGAGACTCCTGAATCAATATTGAAAATGGCCGCTAAAACTTTCCCATATACTCCTTCCATATTGAGGAAGAGAAAGAATGGAGTCCAAGCACATGGAACTCCTAGTAAAGTTGTGAAAATGGATGATGGATTTCGTACTTCTATTGACCAGGAGGAAACCAAGTATAATGCTAGTTTTGGGCATGGGGAGCTCTGTGAGAGTCCCGCGAGGGGTGGCATTCTCAATAAGGCTTTCAATGCTTCTCCCCCTTACCGGTTAAGATTCAAGCGAAAAGCTTTGGTCAAGTCTGTGGAGAAACAACTTGAGTTTGCTTTTGATAAAGAGATGCATGATGGCCACAAAATAGAAAAATCTGCTAGGAGCAATGCAATGGCTGGAGATTGTTTACCTGAAACAAAAATGGCAGTGACGTAG 1689 0.4322 MAELKSEECCLENKQSTAASTSSISEGSASAIHKSPGRCSPASVSPSHRRTTGPIRRAKGGWTAQEDETLRNAVATFKGKSWKKIAEYFPDRSEVQCLHRWQKVLNPELVKGPWTPEEDDKIVELVSKYGPAKWSMIAKSLPGRIGKQCRERWHNHLNPEIKKDAWTLEEELSLMNAHRIHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLEFYLATGNLPPIQKNSAQGGVKDTIRRPASKTVHAFSNKVVDTAADTSSENTDNTKDGSVKNQLESLATVREFGNSMSVPANEGADSDFVEWKPRSSNLDLSYSNSESVSRDNFGLTSDLKFDNTGLNGKHTVGNFVSTGEVSSSRLISTSFSLDSPPSGSLCYEPPLLESSVPLDSVYLSMYCLQNEYNATPVMSPVGFFTPPCVKGSEICTETPESILKMAAKTFPYTPSILRKRKNGVQAHGTPSKVVKMDDGFRTSIDQEETKYNASFGHGELCESPARGGILNKAFNASPPYRLRFKRKALVKSVEKQLEFAFDKEMHDGHKIEKSARSNAMAGDCLPETKMAVT 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g2019 562 ProSiteProfiles Myb-like domain profile. 106 157 IPR001005 -
Alju11g2019 562 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 161 IPR017930 -
Alju11g2019 562 FunFam Transcriptional activator Myb isoform A 111 163 - -
Alju11g2019 562 Pfam Myb-like DNA-binding domain 111 157 IPR001005 -
Alju11g2019 562 Pfam Myb-like DNA-binding domain 59 105 IPR001005 -
Alju11g2019 562 Pfam Myb-like DNA-binding domain 163 206 IPR001005 -
Alju11g2019 562 Gene3D - 58 109 - -
Alju11g2019 562 Gene3D - 110 163 - -
Alju11g2019 562 MobiDBLite consensus disorder prediction 1 56 - -
Alju11g2019 562 SUPERFAMILY Homeodomain-like 56 112 IPR009057 -
Alju11g2019 562 CDD SANT 113 157 IPR001005 -
Alju11g2019 562 MobiDBLite consensus disorder prediction 11 30 - -
Alju11g2019 562 FunFam Transcription factor MYB3R-2 164 228 - -
Alju11g2019 562 Gene3D - 164 234 - -
Alju11g2019 562 ProSiteProfiles Myb-like domain profile. 158 208 IPR001005 -
Alju11g2019 562 ProSiteProfiles Myb-like domain profile. 54 105 IPR001005 -
Alju11g2019 562 SUPERFAMILY Homeodomain-like 108 204 IPR009057 -
Alju11g2019 562 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 212 IPR017930 -
Alju11g2019 562 CDD SANT 62 105 IPR001005 -
Alju11g2019 562 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 105 IPR017930 -
Alju11g2019 562 SMART sant 110 159 IPR001005 -
Alju11g2019 562 SMART sant 162 210 IPR001005 -
Alju11g2019 562 SMART sant 58 107 IPR001005 -
Alju11g2019 562 CDD SANT 165 208 IPR001005 -
Alju11g2019 562 FunFam Transcriptional activator Myb isoform A 58 110 - -
Alju11g2019 562 PANTHER MYB PROTEIN-RELATED 59 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g2019 Alju-ChrAlju11 41611904 41616341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g2019 49 541 MYB Transcription Factor Family AT5G02320 50.992 6.03e-144 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju11g2019 Myb_DNA-binding 2.2e-14 CL0123