Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g2017 ATGAAGGAGAGTGTCGCTGTTTTAGCGCTGAAACCGACGTACGTCTCTGCCACATTAATGCTTCTCACTTTCTCTCTCTCACATTCTGCAACTCTCTCTGCGACCCTAATCTCTGAACCACTTCGCAATTTGCACCCAAAACGCCTTTCATTTTCACGGCCCCCAATTTCCCCTCTCTTTTACGGGGCTATATGCACAGGATTATTGCACAGTAATTCGGACTGTAACAGTTTCCGGAGGAAGGAGGTGGAAACCATGGCCATGCAGGTGAAGCTTACGCTAGCAAATTCCTCTATCAACCATGAAGATTCTTTCCCATTTAGGACCATTTGTGGGACTGATCAACGTTTTGTTGCTGAGGACTCCCTATTGTTTAGAAGGAGGCCAAGGACTTCCTCTTCGTCTACTTTGAGAGTATTGGGAGGATTGGCATATCACATGCAGGATCTTCAATTGCTTTGGGTTATTGATTCCTTAAATGGGCTGTGGGATTTGCACTTGGAAATGAAGGAGAGGCAACGTTGGAGAGCTGAGGAGGACGCATTATTACGTGCTTATGTCAAACAGTATGGTCCTAGGGAATGGAATCTTGTGTCCCAGCGCATGAACACACCCCTTAACAGGGATGCCAAATCCTGCTTAGAAAGGTGGAAGAACTACCTCAAGCCTGGCATCAAGAAGGGATCTCTCACTGAAGAAGAACAACGACTCGTCATCCGACTTCAGGCAAAACACGGCAACAAATGGAAGAAAATTGCTGCAGAAGTCCCAGGTCGCACTGCTAAGAGGTTAGGTAAGTGGTGGGAAGTGTTTAAAGAGAAACAGCAGAGGGAAAAGAAGGAGATCAATAAAACAGTTGACCCAATTGACGACACTAAGTACGATCATATACTTGAGACTTTTGCTGAGAAGCTGGTGAAAGAACGCCCTTCTCCATCCTACCTTATGGCTGCTTCCAATGGAGCTTTCATTCACACTGAAGCATCAGCTCCTACGTCAGCAATGCTTCCTCCATGGCTTTCGAACTCAAATAACTCTACAACGATTCGGCCACCTTCCCCTTCTGTGACTCTAAGCCTCTCTTCTTCAACTGTAGCTGCACCACCTCCTTTTCAATGGTTACAACATGAGAGAGCGCCAGAGAATGCTTCTCTTGTTATAGGGAATGTAACACCTCACGGAACTAATCCAGCTTTTGGTGATAACATGCTAGTATCTGAGCTAATTGAGTGCTGTAAAGAGTTGGAAGAAGGGCATAGGGCATTGTCATCCCATAGAAAGGAAGCAGCATGGAGGTTAAGGCGTGTGGAGTTGCAGTTGGAGTCAGAGAAGGCGTGTCGGAGGCGGGAGAAGATGGAAGAGATTGAAATGAAGATTAAAGCTCTCCGGGAAGAAGAGAAGGCTGCACTGGATAGAATTGAGGCCGAATACCGGGAGCAGCTAGCTGGACTGAGGAGAGATGCAGAAACCAAGGAGCAGAAGTTGGCTGAGCAGTGGGCTGCAAAGCACTCAAAGGTTAGTAAGTTTCTAGATCAGATGGGGTGCAGAACCAGGCTTGCTGAGCCAACCCAACATGGTATCAAAGCCATTAATCCACCTGATATTTCTTCATCAAAAAATCAAGAAAGGCCCATCGTAGGCCCAAGAATGCGCCCATCATCCAGAGTCTATTCTCTTGCACACCTCGCCATCGTCAAGCACTCTAGGCACCGCGTCAATGATTTTCTCCACCATGCTCCATGTCTCCGATGGTTGTGA 1758 0.4704 MKESVAVLALKPTYVSATLMLLTFSLSHSATLSATLISEPLRNLHPKRLSFSRPPISPLFYGAICTGLLHSNSDCNSFRRKEVETMAMQVKLTLANSSINHEDSFPFRTICGTDQRFVAEDSLLFRRRPRTSSSSTLRVLGGLAYHMQDLQLLWVIDSLNGLWDLHLEMKERQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKKEINKTVDPIDDTKYDHILETFAEKLVKERPSPSYLMAASNGAFIHTEASAPTSAMLPPWLSNSNNSTTIRPPSPSVTLSLSSSTVAAPPPFQWLQHERAPENASLVIGNVTPHGTNPAFGDNMLVSELIECCKELEEGHRALSSHRKEAAWRLRRVELQLESEKACRRREKMEEIEMKIKALREEEKAALDRIEAEYREQLAGLRRDAETKEQKLAEQWAAKHSKVSKFLDQMGCRTRLAEPTQHGIKAINPPDISSSKNQERPIVGPRMRPSSRVYSLAHLAIVKHSRHRVNDFLHHAPCLRWL 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g2017 585 CDD SANT 231 272 IPR001005 -
Alju11g2017 585 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 222 276 IPR017930 -
Alju11g2017 585 Gene3D - 172 226 - -
Alju11g2017 585 MobiDBLite consensus disorder prediction 527 550 - -
Alju11g2017 585 Gene3D - 230 288 - -
Alju11g2017 585 Pfam Myb-like DNA-binding domain 175 236 - -
Alju11g2017 585 ProSiteProfiles Myb-like domain profile. 222 272 IPR001005 -
Alju11g2017 585 ProSiteProfiles Myb-like domain profile. 167 221 IPR001005 -
Alju11g2017 585 CDD SANT 174 221 IPR001005 -
Alju11g2017 585 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 167 221 IPR017930 -
Alju11g2017 585 FunFam MYB-related transcription factor 172 226 - -
Alju11g2017 585 SUPERFAMILY Homeodomain-like 172 266 IPR009057 -
Alju11g2017 585 Coils Coil 452 494 - -
Alju11g2017 585 SMART sant 171 223 IPR001005 -
Alju11g2017 585 SMART sant 226 274 IPR001005 -
Alju11g2017 585 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 169 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g2017 Alju-ChrAlju11 41566991 41572103 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g2017 169 516 MYB Transcription Factor Family AT2G37630 67.213 8.67e-165 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju11g2017 Myb_DNA-bind_6 4.9e-14 CL0123