Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1978 ATGGAATTTAATCGTCAAAGCACAAAGAAGTTATCAGAACAAGTAAGATGGAGCCCAGAAGAATCTGGAGCCAGATCTTATACATGTGCGTTTTGCAAGAGAGGATTTTCAAATGCTCAAGCCCTAGGAGGTCACATGAACATCCATAGAAGAGACAGAGCAAAGCTCAAACAATCATCTGAAGAAAACTTGCTTTCTCTGGACATCTCAATCAAGAACCCTAATAATAATAGTACCTGTACTTCTGATGATGACGATGATGATCAGCCTCCTCCTAATTATAACAAACCTTCTAATTCAGAAGAGAAGGTTTCGTTTCAGTGGGATTCTTCTGAAACACTACCAAATAATCCCTTTTTTGCTGGGAATAATAATGAGGAGAACATTGAAATAGATCTTGAGCTTCGGTTAGGTCTTCAACCACATGACGCCTCAACTCTGAGCACCAAAGAATTTTTTTAA 462 0.3853 MEFNRQSTKKLSEQVRWSPEESGARSYTCAFCKRGFSNAQALGGHMNIHRRDRAKLKQSSEENLLSLDISIKNPNNNSTCTSDDDDDDQPPPNYNKPSNSEEKVSFQWDSSETLPNNPFFAGNNNEENIEIDLELRLGLQPHDASTLSTKEFF 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1978 153 Gene3D Classic Zinc Finger 4 85 - -
Alju11g1978 153 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
Alju11g1978 153 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Alju11g1978 153 MobiDBLite consensus disorder prediction 68 123 - -
Alju11g1978 153 SUPERFAMILY beta-beta-alpha zinc fingers 23 53 IPR036236 -
Alju11g1978 153 PANTHER OS07G0101800 PROTEIN 14 140 - -
Alju11g1978 153 MobiDBLite consensus disorder prediction 1 23 - -
Alju11g1978 153 MobiDBLite consensus disorder prediction 92 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1978 Alju-ChrAlju11 41147254 41147822 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1978 24 138 C2H2 Transcription Factor Family AT3G09290 39.855 3.92e-21 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju11g1978 None None None