Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1942 ATGGAGGAGGGTTTTGAGCCTTACCATGTTCCTCAGCAAAGCAGGAGAGACAAACTCAGGGTCGGATTTCATCAAAACCAACACTCTTCCCTCCCCACCACGGCGGCGTGCGGCGGTGTACTCCCGGCGGTCTCCAACCCTTCCCTTATTCCCTCCGATCTGCTAACGTGCGCCAACAATAATCCTCAATCTTCAAATTTGCAAATAGACCCCGCAACTGTTCAAATTATCAACAACAACCCTTTTCTTAACTTTCCTCTCGCTCAAACCCTTCGCGCCGAGCCATTGTCTTTATCTCTCTACACTCCGCAAGCCAATCTTAACAGTAATCCCCCACTTGAGCTGAATCTTCAGAGATATGATGGTGGCGGCGGCTCCGTGAATAATATCCCGGTCGCCAACAACGCCGTTTTGAGAAGCTCCGTCGTCGTGCCTGTGGGGCCCTTTACTGGTTACGCTTCCGTGTTGAAGGGATCGAGGTTTCTGAAGCCAGCTCAACAGTTATTGGAGGAGCTTTGCGATGTTGGGGGTCGTGAAATTTGCGCTGCAGAAAAGTTGACGGCTGACGCTTCGTTGATGGAGCCTCCTCCGTCGTCGGAGAGCCTCGTCTCCGGCGATCCGCCGCAGCCGGCGCTTGGAGATAGCGGTGGGGAGGGTGGGAAGAAAAAGTCGAGACTGTTAACCATGCTTGATGAGGTGTACAGAAGGTACAGGCAGTACTATCAACAGATACAAGCAGTAGTAACTTCATTTGAGTATGTTTCAGGCCTTGGTAACGCAGCTCCTTATGCAATCTTGGCGATAAATGCCATGACCAAGCATTTCAAATGCTTGAAGACTCTGATCATGGACCAGCTTCAGTTCACTAACAAGTCTAATTTTCACAATATGAGCAACAAAAAAGATGAATCTCCAAGGTTTGGAAATGTTGACCATAGAGGAGCAGGACTTTACAGCCAAATTAGGGATACTCAAAACCCTGAATTATTAGGGAACCAACCGATCTGGAGACCTCAACGAGGACTCCCCGAACGTGCAGTGACCGTTCTTCGGGCTTGGTTGTTTGAGCACTTTCTTCACCCATATCCTACTGATACGGACAAGCTAATGCTGGCGAGACAGACCGGTCTGTCTCGTAGCCAGGTATCAAACTGGTTCATCAATGCAAGAGTAAGGTTGTGGAAACCTATGGTTGAAGAAATACACATGCTAGAAACAAGACAGTCTCAAAAGAATCATCAGAACGCAGAAGATCACAAGAACAAGCCCAGCACAAGTGACAAGTTTCAAAAAGATGATGCTCCTTTTAAACGCACCAGAAATTATGAACCTACTACTCATCATGATATGTCTGCATCAGTGACCAATCATCAGCTGCCATGTAATGCAATAAGCAGTGTCAATAATAGTAATCAGCCAGTGAGTGTTGGAGCTGTGGCCAATAGCGTGTCGCTCACACTGGGTCTCCACCAGAACAACGGTGGGCTTGCTCTATCTGAACCTTTTCCCATGAGTGAAGCTCTCCGTTTTGGGCTTGCCCTAGAAGTACCCAGTAACGAAGAATATGTAATGAGTGGTTCTGAATCGCAGAATCGGCATTATGGAAGAGACCATCAGGTGATTGGAGGGCAACTTGTGCATGACTTTGTTGGTTAA 1656 0.4789 MEEGFEPYHVPQQSRRDKLRVGFHQNQHSSLPTTAACGGVLPAVSNPSLIPSDLLTCANNNPQSSNLQIDPATVQIINNNPFLNFPLAQTLRAEPLSLSLYTPQANLNSNPPLELNLQRYDGGGGSVNNIPVANNAVLRSSVVVPVGPFTGYASVLKGSRFLKPAQQLLEELCDVGGREICAAEKLTADASLMEPPPSSESLVSGDPPQPALGDSGGEGGKKKSRLLTMLDEVYRRYRQYYQQIQAVVTSFEYVSGLGNAAPYAILAINAMTKHFKCLKTLIMDQLQFTNKSNFHNMSNKKDESPRFGNVDHRGAGLYSQIRDTQNPELLGNQPIWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLARQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQSQKNHQNAEDHKNKPSTSDKFQKDDAPFKRTRNYEPTTHHDMSASVTNHQLPCNAISSVNNSNQPVSVGAVANSVSLTLGLHQNNGGLALSEPFPMSEALRFGLALEVPSNEEYVMSGSESQNRHYGRDHQVIGGQLVHDFVG 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1942 551 FunFam BEL1-like homeodomain protein 9 339 401 - -
Alju11g1942 551 SMART HOX_1 336 400 IPR001356 GO:0003677
Alju11g1942 551 SUPERFAMILY Homeodomain-like 338 403 IPR009057 -
Alju11g1942 551 Gene3D - 339 401 - -
Alju11g1942 551 SMART prehox3 150 284 IPR006563 -
Alju11g1942 551 MobiDBLite consensus disorder prediction 407 445 - -
Alju11g1942 551 Pfam Associated with HOX 155 282 IPR006563 -
Alju11g1942 551 CDD homeodomain 336 397 IPR001356 GO:0003677
Alju11g1942 551 MobiDBLite consensus disorder prediction 407 449 - -
Alju11g1942 551 ProSiteProfiles 'Homeobox' domain profile. 333 396 IPR001356 GO:0003677
Alju11g1942 551 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 63 418 - -
Alju11g1942 551 Pfam Homeobox KN domain 353 392 IPR008422 GO:0003677|GO:0006355
Alju11g1942 551 MobiDBLite consensus disorder prediction 191 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1942 Alju-ChrAlju11 40655144 40660342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1942 1 551 Homeobox Transcription Factor Family AT5G02030 41.516 9.84e-110 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Alju11g1942 POX 3.7e-35 No_clan