Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1915 ATGTTATCAATTATTCAGATACGCCGTGCAGACTTGGAGCAGGGAAGCCACGGCGGTGACATGACCAGCGAGGCTAGCATTAGTCTCTCTGACTCTGAGGCTAGAGATAGAGAGTGTAGGATTTGTCACATGGGTTTGGAGAGTGATAGGCATGTATATGGGGTTCCAATTGAATTGGGTTGTTCCTGCAAGCATGATCTTGCTGCTGCTCATAAACTCTGTGCTGAAACCTGGTTCAGAAATCAAGGGAACAGGACCTGTGAAATCTGTCATTCTGTGGCACGGAATGTTTTTGCAACAAATGAGGAGACAACTGAGAATTTAAGGGACAGCAACAACGTTATAATCGTATCCACAACTCAACTAGAAATTCCTCGAACTTTTTGTCTAGATCCTCACATCCTGGAACTTTGTATATTTATCATATTTTTCATTGCATTTATCATCGCATTCGTGTTCGCAGGGTTAGTGTAA 474 0.4283 MLSIIQIRRADLEQGSHGGDMTSEASISLSDSEARDRECRICHMGLESDRHVYGVPIELGCSCKHDLAAAHKLCAETWFRNQGNRTCEICHSVARNVFATNEETTENLRDSNNVIIVSTTQLEIPRTFCLDPHILELCIFIIFFIAFIIAFVFAGLV 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1915 157 PANTHER ZINC FINGER, RING-CH-TYPE 18 151 - -
Alju11g1915 157 Pfam RING-variant domain 39 90 IPR011016 GO:0008270
Alju11g1915 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 102 IPR013083 -
Alju11g1915 157 ProSiteProfiles Zinc finger RING-CH-type profile. 31 97 IPR011016 GO:0008270
Alju11g1915 157 SUPERFAMILY RING/U-box 35 94 - -
Alju11g1915 157 SMART ringv_2 38 91 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1915 Alju-ChrAlju11 40305411 40306357 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1915 11 153 C3H Transcription Factor Family AT5G05830 43.243 9.60e-30 105