Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1912 ATGGAAGTGGATGAAAAACCCGTCGTTGAGCTCGACAAACCACCCGCCGGGGACGTTGGCGGCGGTGGAGACGGCGGTAGTGGCGACGAGGGTTTAACAGCGTTAGGTGACGGCGGGGGGAGTGGCTCCCAGGGGGCTAAAGACAGAGTGAAGGGTCCTTGGTCTCCAGAGGAGGACGCGATACTGAGTCGACTTGTTAGCAAGTTCGGCGCCAGAAATTGGAGCTTAATTGCTCGCGGGATCGCTGGAAGATCCGGCAAGTCTTGCCGGCTCCGGTGGTGTAATCAACTCGACCCAGCTGTGAAGCGCAAGCCCTTTTCTGATGAGGAGGATCGGATCATAGTTGCAGCACATGCAATCCATGGGAACAAATGGGCAGCCATAGCCAGACTTCTACCAGGAAGAACAGATAATGCCATTAAGAATCATTGGAATTCTACTTTGAGGCGTCGGGGAATAGAACTTGATAAAGTTAAATTAGAACCTTGCAACACAGTGGAAGATGTTAGCTTGGAGAAAACAAAAGCATCATCAGAAGAAACTCAGTCATGTGGGGATGTTAATTCCTTGAGATCCTCAGAAGGAAGAGATGTCAGTTCTGTGGAGAATATGGAGGATAAATATGAAGACAAAGCACAGACAGAGAGTCAAATGAACCATGAAGTCAAGGATCCGCCTACCCTTTTCCGACCTCTGGCACGTATTAGTGCTTTTAGTGTGTATAGCTCATTGGATGGTTCACTAACTGCAACATCAGCCTCTAGGCCAGTTCCAATGCAAGGACCTCTTTTTCAGGCATCAAAGCCAGGTATTGAAATTTGTAAAATGCTGGATGGAATTTATGGCTGTGACCTATCTGTTCCTAACCACTGTGGCCATGGTTGTTGCACTGGTCTAAATGGTGAAAGTGGCAAAAGCTCCTTGTTGGGGCCAGAATTTATTGAATTCTCAGAGCCCCCGTCATTCCCAAGTTTTGAGTTGGCAGCCATAGCTACAGACATCAGTAACCTTGCTTGGCTGAAAAGTGGATTGGAGAATAGTAGTGTCAAAATGATGGGTGACTCAGCCGGCGGGGTGATATCTCATGAATCTCAAGTGAATATTGGCCATTAA 1113 0.4798 MEVDEKPVVELDKPPAGDVGGGGDGGSGDEGLTALGDGGGSGSQGAKDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFSDEEDRIIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGIELDKVKLEPCNTVEDVSLEKTKASSEETQSCGDVNSLRSSEGRDVSSVENMEDKYEDKAQTESQMNHEVKDPPTLFRPLARISAFSVYSSLDGSLTATSASRPVPMQGPLFQASKPGIEICKMLDGIYGCDLSVPNHCGHGCCTGLNGESGKSSLLGPEFIEFSEPPSFPSFELAAIATDISNLAWLKSGLENSSVKMMGDSAGGVISHESQVNIGH 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1912 370 Gene3D - 50 102 - -
Alju11g1912 370 FunFam Transcription factor MYB44 105 151 - -
Alju11g1912 370 PANTHER MYB PROTEIN-RELATED 51 202 - -
Alju11g1912 370 MobiDBLite consensus disorder prediction 1 54 - -
Alju11g1912 370 SMART sant 50 99 IPR001005 -
Alju11g1912 370 SMART sant 102 150 IPR001005 -
Alju11g1912 370 Pfam Myb-like DNA-binding domain 54 111 - -
Alju11g1912 370 MobiDBLite consensus disorder prediction 171 203 - -
Alju11g1912 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 101 IPR017930 -
Alju11g1912 370 CDD SANT 53 95 IPR001005 -
Alju11g1912 370 MobiDBLite consensus disorder prediction 176 197 - -
Alju11g1912 370 ProSiteProfiles Myb-like domain profile. 46 97 IPR001005 -
Alju11g1912 370 Gene3D - 105 151 - -
Alju11g1912 370 SUPERFAMILY Homeodomain-like 48 144 IPR009057 -
Alju11g1912 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 152 IPR017930 -
Alju11g1912 370 FunFam MYB transcription factor 51 102 - -
Alju11g1912 370 CDD SANT 105 148 IPR001005 -
Alju11g1912 370 ProSiteProfiles Myb-like domain profile. 98 148 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1912 Alju-ChrAlju11 40279751 40284383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1912 40 357 MYB Transcription Factor Family AT3G09230 50.305 1.84e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju11g1912 Myb_DNA-bind_6 8.3e-16 CL0123