Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1897 ATGTCACTCTGTGCGATTGCTGGGAAGCAACCCGCCGCGGGTAATGGGGACCAAGATGGTAGCTCTAGTTCTACTATCTCGTCGCGCATTCCCCCTTTCGTGTCCTTCCATGAGATACAACAGCCACAACTCCAGTCTTCTTACTTCATTCCCACCAAGCACAGTCGAGTCGATTTTCCCAGATTTGATGGCTCTGACTTTCGTGGCTGGGCATATCGCTGCCGTCAATTCTTTGAGGTTGACGGAACTCCTCTGGAACATCGTATTCGGCTACTCAGCATTCATTTGGAAGGGCACGCGCTTCGTTGGCATCAAACTTTTATGCGCCATCGTTCTTTTTCTGAGATTAAATGGGATGACTATTTCCAGCAGATGGAGGCCAAGTTCACGGAGGTGCGAGATGAGAATCCCCTTATTGCACTTAAGAAGTTACAGCAAGGTGATGACTCGGTCACTGATTATGAAAAGAAGTTCGATGAGTTGCTGTCGGAGGTGGATATTGTTGAGTCGGTTGTGATTAATCTATTCATTGGAGGATTACGAGCTGATATTCAACAATTGGTGCTGAACTTCACACCGTTGACGCTAGCGACCGCCATGAATTCTGCTCGCTTGCAAGAGGCAACTATCAGGGCCCTTCATGATCATTTCCCATCTGGTCGTCGCAAAGAGAGTTCTCCGATAGTGGGAATTACGGGTCCCTCCAGCGGGTATGGATCCTGGGTCGAATCTAGCCATGGCTCTAAATCCGGCCCACAACCCGATCAATCCTCTGCAGCATTGAAATGTTTTACTTCGGTTCCTTCTAAACCCACGCCTGTGGCTTCTCACTCATCGTCATTTTCACCGAGTTCCTTGTCAAAACCCACTCGGCAACTTTCAAAAAAAGAAATGGATGAACGACGTCGGAAAGGCTTATGTTACTGGTGCCTGGAGAAATTCAGCGCAGGCCACCGTTGCAAGGATTCTCATCTTTTTACGCTAGTGGTTGAGGAGGATGAAGAACAATTTGAAGACGCACTTGGGGTTCTACAAAGCGAGACAGAAGGAGCTGTCAATGCGATAGAGGGGCGTGAGAACACTACAACTTTAAAATTGCTGGGCCATATCAAGAATCAGCAGATTATTATCTTAATTGATACGGGGAGCACCCATAATATATTGAACGCCTCTTTAGCTAAGCGCCTCAGGTTGAAATTACATGACCGGGACCCAATTCGACTTACCGTGGCCGATTCTCGTCAGGTTTGTGTCACTCAACATTGTCTTGCCTTAAGTTGGGAAATGGGTGGCTTGTATTTTTCTTCTGACTTCTTAGTTATGAAAATCAGTGGCTATGATGCCATCCTGGGTATTCAATGGCTGAAAACTTTGGGTCGTTTCATTATGGATATGGAGCTCAAAATTTTTGAGTTTTATGCTAACGGTCGTTCAGTGGAATTGAAGGGTTTGGGTTCTGGTATACCAATGCCATCTGAGGAAGTATTGAGCTGTCGTGATTTTATTGTAGCTAATGAATTATATTGGATTCATACCCCTTCTCTTTTACAAGTGGGGTTGGAACCTGGTTCTACTCTCTCAGAAGACCAACGAACAGAGTTGCAGACACTTTTAGACACTTTTATTGATGTTTTTGCTGAGCCTAGTGGTCTACCTCCATATCGGAAATTTGATCACTCTATTCCTCTCAAAGCTGATAGGACCATCAGTTGTAGACCCTACCGTTATGGCCCTGTTCAGAAGACTGAGATTGAGAATCAGATTCAACAAATGCTTTCCAATGGCATTATCCGTGAAAGCTCTAGTGATTTTGCTGCGCCAGTGGTCTTGGTACAAAAGAAGGAAGGTACATGGCGATTCTGCGTTGACTATCGTAAATTAAATGAGGCTACTATAAAGAACAAGTTTCCAATCCCTGTTATTGATGAATTGCTAGATGAGTTAACAGGTGCTACCTTCTTTTCTAAGCTTGATTTACGAGCTAGGTATCACCAAATTCGAATGAAGGAAGATGACATTGCTAAAACAGCTTTCCGAACTCATGAAGGTTTATATGAATTTTTAGTTATGCCCTTTGGCTTAACAAATGCCCCGGCCACTTTCCAAAGGCTCATGAATTCTATTTTTAAACCTTTCTTGCACAAATTCATCCTAGTCTTCTTTGATGACATTCTGGTCTATAGCAAAGATTGGTCTACTCATTTACAACACTTAGAAACTACCCTGTCAACTTTAAGACAGCAACAACTTTTTGCTAAGGCTTCCAAGTGTACTTTTGCTGCCATTAAAATTGACTATTTGGGTCATTTAATTTCTGGCCAGGGTGTTCAATCTGATCCTCGGAAGCTGGCTGCTATAGCTTCTTGGCCGGAACCTTCTTCTCTTCGGGAATTACGAGGCTTCCTTGGTCTTACGGGGTATTACCGCCGATTCATAAAGGATTATGGTTCTATTAGTCGCCCCTTGACTGACTTGTTGAAGAAGAATAAGAAATTTGTGTGGACTTCTACTGCTGCTTCTGCTTTTCAATCTCTTAAGGAAGTTATGATGTCACCTCCAGTCCTTGCTTTACCCAACATCACGGATACCTTTGTTATTGAGACTGATGCTTCTGGTTCTGGTTTAGGAGCAGTTCTGTCTCAAAATGGCCATCCATTGGCTTATGCTACGGATGCCCTCTCTCGACGCCTTGAAGGCTCTTGTTTAGCCCTTTCTGATCCCACATCTCACTCCAAGTTTACTTGGCAGCATCACTTGCTTAAACGGAAAGGGAAGCTGGTTGTAGCAGCTGATCGCAGCCTTCGTAAGGATTTGCTTATGTTCTTTCATGCTGATAGCATTGGCGGACACTCAGGTATTCATTCTACCTTCAACAGACTTGCTTCTTTTTTCTATTGGAAGGGTATGGAAAAAGATGTTCGTAACTTTGTGCGTGAATGCACTATTTGCCAACATTTTAAACCTGAATTGGTCGCTTCTCCGGGTCTTCTCCAACCCCTCCCTATTCCAGAAACTGTTTGGTCTGAATTGTCTATGGACTTTATTGGTGGTCTTCCAAAATCTTACTCTAAAACCACTATTCTGGTTGTGGTAGATAGACTATCAAAGGCGGCTCACTTTATGGCACTTAAACATCCTTATACAGCTGTGGATGTTGCTCATGTTTTCATGGATACTGTTGTTAAGTTGCATGATTTCCCTAAATCTATTGTTACTGATAGAGATCCCATTTTTTGTGGGAAATTTTGGAAGGATCTGTTTCGTTTATACAGGGTGAAACTACATTACTCCTCTGCTTACCATCCTCAAACGGATGGACAAACGGAAGTTCTTAATCGTTGTTTGGAGTGCTATCTCCGGTGCATGACCGGTGACTTTCCTAAGCAATGGGTTAAGTGGTTATCTTTAGCTGAATTGTGGTACAACACCACTTATCATTCAGCCATTGGCATGACCCCTTTTGAAGCTATCTATGGTGTGCCACCACCCATTCACCTTCCTTATATTGCTGGGGACTCTTCCAATGACTTGGTAGATCGTACTTGCTTATCTCGTGAAACGACTCTTCAACTTCTAAAAGAGCATTTGTTGAAAGCACAACATATAATGGTGCAGCAAGCTAATAAGCACAGATCTGAGAGACAGTTTGCTATCGGTGATATGGTTTATCTCAAGTTGCATCCCTTTAGGAGGAATTTACTTAACAATTCTGCCCTTCACAAACTTGCAGCAAGATATTTTGGCCCATTTCGAGTCTTAAAGAAAGTTGGGGCCGTGGCTTATGAATTGGATCTTCCCCCAGAAACTCAAGTACACCCCGTCTTTCATGTTTCCCTCCTCAAAAAACATGTTGGGCCTCTTGCTACTGTCACTCAGTCTCTACCACCTGTAGATGACCAAGGCCAATTCACCCTTGAACCAGAAGCGATATTGGGCCGCAAACTTAGCCCTTGTGAGCATGCCTTCTGCCTTGATTGTGCTAGAAGTGACCCGATGTGCTGCCTGTGTGATGAACGAATCCAGAAGATTCAAACCATCAAAATGATGGAAGGAATCTTTGTTTGCGCTGCTCCTCATTGTCTCAAGTCTTTCTTGAGGAAGGCTGAATTCGAATCTCACATCCAAGAAAACCACTCGGATCTTCTTCGGCGTAATGCAGAGAGAGAAGATGGAAATGAATCAGAGGCACAGAGTGTTGGGCAATCTACAGCATCAGACTCCGCTTCTCGAGGTCCCCAGAGGCCCCTTTTCTCTGCTGGTTCAAAGTCACAGCTTCATGATTGGGATGACAAAAGCCGTCAACAGCCAATAAGAGAGCAGCCCCCTTCAAGGCCAATTCAACAGCCAAAGCCACCATTTTTTGGTCAAGCACCTAATCCTTCTTTGGATCCCCAATCAGGCAACAATGGAGCTATTCAACAGGACTTCCATCCACAAAGTTTTGAGAGACAACAAGGAGTTACTTCAGAGACCCCAATTCGTAATTATCTACACAATGTTGTCATGCAAGTTAATCGTAACGCATTGCCGAAACCTCCTATGGAATATAGTTACCTCACTTACCCACCAGAGGGAGCTCAGCCCTTTTATGCTTCATCCTATGACATGCCTAGGCCAAATTCATCTTCTGAAATAGGTTTAGATCAGAGTTCATTACTGGGATACCCACGAGGTCATTCAAGTGGCCCAAATTTTCCAGCAAATTATCCTCAGGCCTGGAATGCAGGAATGACTGGTGTTGTGCCTTTTGATCAAGCTCAGGGTGGTATGATTTTTGACCCAAGGGATGCTAAAGGAATGTAG 4803 0.4397 MSLCAIAGKQPAAGNGDQDGSSSSTISSRIPPFVSFHEIQQPQLQSSYFIPTKHSRVDFPRFDGSDFRGWAYRCRQFFEVDGTPLEHRIRLLSIHLEGHALRWHQTFMRHRSFSEIKWDDYFQQMEAKFTEVRDENPLIALKKLQQGDDSVTDYEKKFDELLSEVDIVESVVINLFIGGLRADIQQLVLNFTPLTLATAMNSARLQEATIRALHDHFPSGRRKESSPIVGITGPSSGYGSWVESSHGSKSGPQPDQSSAALKCFTSVPSKPTPVASHSSSFSPSSLSKPTRQLSKKEMDERRRKGLCYWCLEKFSAGHRCKDSHLFTLVVEEDEEQFEDALGVLQSETEGAVNAIEGRENTTTLKLLGHIKNQQIIILIDTGSTHNILNASLAKRLRLKLHDRDPIRLTVADSRQVCVTQHCLALSWEMGGLYFSSDFLVMKISGYDAILGIQWLKTLGRFIMDMELKIFEFYANGRSVELKGLGSGIPMPSEEVLSCRDFIVANELYWIHTPSLLQVGLEPGSTLSEDQRTELQTLLDTFIDVFAEPSGLPPYRKFDHSIPLKADRTISCRPYRYGPVQKTEIENQIQQMLSNGIIRESSSDFAAPVVLVQKKEGTWRFCVDYRKLNEATIKNKFPIPVIDELLDELTGATFFSKLDLRARYHQIRMKEDDIAKTAFRTHEGLYEFLVMPFGLTNAPATFQRLMNSIFKPFLHKFILVFFDDILVYSKDWSTHLQHLETTLSTLRQQQLFAKASKCTFAAIKIDYLGHLISGQGVQSDPRKLAAIASWPEPSSLRELRGFLGLTGYYRRFIKDYGSISRPLTDLLKKNKKFVWTSTAASAFQSLKEVMMSPPVLALPNITDTFVIETDASGSGLGAVLSQNGHPLAYATDALSRRLEGSCLALSDPTSHSKFTWQHHLLKRKGKLVVAADRSLRKDLLMFFHADSIGGHSGIHSTFNRLASFFYWKGMEKDVRNFVRECTICQHFKPELVASPGLLQPLPIPETVWSELSMDFIGGLPKSYSKTTILVVVDRLSKAAHFMALKHPYTAVDVAHVFMDTVVKLHDFPKSIVTDRDPIFCGKFWKDLFRLYRVKLHYSSAYHPQTDGQTEVLNRCLECYLRCMTGDFPKQWVKWLSLAELWYNTTYHSAIGMTPFEAIYGVPPPIHLPYIAGDSSNDLVDRTCLSRETTLQLLKEHLLKAQHIMVQQANKHRSERQFAIGDMVYLKLHPFRRNLLNNSALHKLAARYFGPFRVLKKVGAVAYELDLPPETQVHPVFHVSLLKKHVGPLATVTQSLPPVDDQGQFTLEPEAILGRKLSPCEHAFCLDCARSDPMCCLCDERIQKIQTIKMMEGIFVCAAPHCLKSFLRKAEFESHIQENHSDLLRRNAEREDGNESEAQSVGQSTASDSASRGPQRPLFSAGSKSQLHDWDDKSRQQPIREQPPSRPIQQPKPPFFGQAPNPSLDPQSGNNGAIQQDFHPQSFERQQGVTSETPIRNYLHNVVMQVNRNALPKPPMEYSYLTYPPEGAQPFYASSYDMPRPNSSSEIGLDQSSLLGYPRGHSSGPNFPANYPQAWNAGMTGVVPFDQAQGGMIFDPRDAKGM 1600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1897 1600 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1304 1353 IPR013083 -
Alju11g1897 1600 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 524 1159 - -
Alju11g1897 1600 Gene3D - 997 1201 IPR036397 GO:0003676
Alju11g1897 1600 Pfam RNase H-like domain found in reverse transcriptase 834 894 IPR041577 -
Alju11g1897 1600 MobiDBLite consensus disorder prediction 1459 1474 - -
Alju11g1897 1600 FunFam Transposon Tf2-6 polyprotein-like Protein 781 870 - -
Alju11g1897 1600 Gene3D - 781 867 IPR043128 -
Alju11g1897 1600 Gene3D Acid Proteases 352 480 IPR021109 -
Alju11g1897 1600 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 592 771 IPR000477 -
Alju11g1897 1600 MobiDBLite consensus disorder prediction 239 291 - -
Alju11g1897 1600 MobiDBLite consensus disorder prediction 1442 1458 - -
Alju11g1897 1600 Gene3D - 901 986 - -
Alju11g1897 1600 SUPERFAMILY DNA/RNA polymerases 537 895 IPR043502 -
Alju11g1897 1600 ProSiteProfiles Zinc finger C2H2 type domain profile. 1353 1379 IPR013087 -
Alju11g1897 1600 FunFam Retrovirus-related Pol polyprotein from transposon gypsy-like Protein 909 986 - -
Alju11g1897 1600 CDD retropepsin_like 366 456 - -
Alju11g1897 1600 MobiDBLite consensus disorder prediction 1386 1474 - -
Alju11g1897 1600 MobiDBLite consensus disorder prediction 8 27 - -
Alju11g1897 1600 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 558 696 - -
Alju11g1897 1600 CDD RT_LTR 595 771 - -
Alju11g1897 1600 FunFam Retrovirus-related Pol polyprotein from transposon 17.6-like Protein 664 696 - -
Alju11g1897 1600 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 611 769 IPR000477 -
Alju11g1897 1600 SUPERFAMILY Ribonuclease H-like 999 1161 IPR012337 -
Alju11g1897 1600 Pfam Retroviral aspartyl protease 350 458 - -
Alju11g1897 1600 ProSitePatterns Zinc finger C2H2 type domain signature. 1355 1378 IPR013087 -
Alju11g1897 1600 MobiDBLite consensus disorder prediction 239 298 - -
Alju11g1897 1600 Gene3D - 636 771 IPR043128 -
Alju11g1897 1600 Pfam Integrase zinc binding domain 931 988 IPR041588 -
Alju11g1897 1600 ProSiteProfiles Integrase catalytic domain profile. 997 1161 IPR001584 GO:0015074
Alju11g1897 1600 Pfam Ty3 transposon capsid-like protein 87 206 IPR045358 -
Alju11g1897 1600 MobiDBLite consensus disorder prediction 1395 1420 - -
Alju11g1897 1600 ProSitePatterns Zinc finger RING-type signature. 1318 1327 IPR017907 -
Alju11g1897 1600 SUPERFAMILY Acid proteases 367 462 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1897 Alju-ChrAlju11 40129140 40134991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1897 1307 1577 C2H2 Transcription Factor Family AT5G01160 41.367 2.89e-45 166