LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju11g1862	ATGATTGGCATTTCTTCACTTTCATCAGTGTACTTGGATGTCTCCAATAATGTTCTTACAGGACCTTTACCAGATGATGTGGGAAATTTAGAGAGTCTAACACAGCTGGTACTCTCAGAGAACAACTTTTCTGGTGTCATTCCATCTTCTCTTGGAAAATGTGTCATCTTGGAGCTGCTGCACTTGCTGGACCTCGCAAGATGCACTGGTGGGTTCTCCCAAGATAACTTGATCGGTTCCGGAAGCTTTGGTTCGGTATATAAAGGAACTCTTGCAGAATATGGTATGGATGGGCAACCTTCAATACTGGGAGTTATCTATAGCTATGGGATACTATTAATGGAGATTTTCACAGCAAAGAGATCAATTAATGATGAATTTGAAGGAGGGATGGGAATTCACTATTGTGCAGCAAGGGCTTTATCCAATCATGCTATGGAGATTGCTGATCCTTGCTTGCTAGCTGAAGAAGAAGAAGATAAAGAGATACATTTGGAGGAGAGAACAATGAGGAAGGGAAGTAGAAGAGGGAGAGTAATGGAGGATTGGTTGCGTTCGTTGATGGAAGTGGGAGTATCTTGCTCTGCAAATGTGCCATCGGAGAGGCTGCAATCTATGACTCTGAGGAGCTTCAAGGAGTTCATTGACGAATGCAAAGCTTTGAGAGGAATCAGCCACTGGAACCTGCTCAAGATCATAACAGCTGTATCAAGTATTGATCACCAAGGTGATGACTTCAAAGCTTTGGTGTTTGAGTTCATGTCAAATGGAAATCTAGATGATTGGATACATCCCAAAGATAAATTGCAACAAGAGAGCAAGAGATTGACATTCATCCAAAGACTGAACATAGCAATTGATGTTGCATGCGCACTTGAGTATCTGCACAACTTTTGTCAAACACCTATCGTGCATTATGATGTAAAGCCAAGCAATGTACTCCTTGATGATGATTTGGTAGCCCATGTGGGTGACTTCGGAATAGCAACCCTTCTATATGAAGAATCAAGTGACCCTTCCACTTTCAAAGAACACTCAACAATGTCATATTGCCTAAAGGGTTCAATCGGGTACATTCCACCAGGAAAGAGACCCACTAATGATGAATTTGAAGGAGGGATGGGAATTCACCATTGTGCGGCAAGGGCTCTACCCAATCTTGCTATGGAGATTGCTGATCCTTGCTTGCCATCTGAAGAAGAAGAAGAAGATGATGATGATGATGAAGATGGAGAGAGATATTCGGAGAAGAGAGCAATAAGGAAAGGAAGTGGAAGAGGGAGAGTAATGGAGGATTGCTTGAGTTGGTTGATGGAAGTGAGAGTTCCTTGCTCTGCAAATGTGCCATCGGAGAGGTTGCGGTCTATGACTCCGGTTGTAAACAAATTCCATGCGGTCAAGAAACTGTACACCTCCAAATAA	1422	0.4269	MIGISSLSSVYLDVSNNVLTGPLPDDVGNLESLTQLVLSENNFSGVIPSSLGKCVILELLHLLDLARCTGGFSQDNLIGSGSFGSVYKGTLAEYGMDGQPSILGVIYSYGILLMEIFTAKRSINDEFEGGMGIHYCAARALSNHAMEIADPCLLAEEEEDKEIHLEERTMRKGSRRGRVMEDWLRSLMEVGVSCSANVPSERLQSMTLRSFKEFIDECKALRGISHWNLLKIITAVSSIDHQGDDFKALVFEFMSNGNLDDWIHPKDKLQQESKRLTFIQRLNIAIDVACALEYLHNFCQTPIVHYDVKPSNVLLDDDLVAHVGDFGIATLLYEESSDPSTFKEHSTMSYCLKGSIGYIPPGKRPTNDEFEGGMGIHHCAARALPNLAMEIADPCLPSEEEEEDDDDDEDGERYSEKRAIRKGSGRGRVMEDCLSWLMEVRVPCSANVPSERLRSMTPVVNKFHAVKKLYTSK	473

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju11g1862	473	SMART	serkin_6	72	460	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju11g1862	473	SUPERFAMILY	L domain-like	11	62	-	-
	Alju11g1862	473	SUPERFAMILY	Protein kinase-like (PK-like)	209	361	IPR011009	-
	Alju11g1862	473	Gene3D	Transferase(Phosphotransferase) domain 1	82	212	-	-
	Alju11g1862	473	PANTHER	LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1	93	205	-	-
	Alju11g1862	473	Pfam	Protein kinase domain	212	347	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju11g1862	473	Gene3D	Ribonuclease Inhibitor	2	81	IPR032675	-
	Alju11g1862	473	MobiDBLite	consensus disorder prediction	397	421	-	-
	Alju11g1862	473	Gene3D	Transferase(Phosphotransferase) domain 1	254	472	-	-
	Alju11g1862	473	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	303	315	IPR008271	GO:0004672\|GO:0006468
	Alju11g1862	473	ProSiteProfiles	Protein kinase domain profile.	72	473	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju11g1862	473	MobiDBLite	consensus disorder prediction	397	411	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju11g1862	Alju-ChrAlju11	39561357	39567293	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju11g1862	10	62	Receptor kinase-like Gene Family	AT3G47090	45.283	2.97e-09	57.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XII-1	Alju11g1862		Pkinase	2.1e-19	CL0016