Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1851 ATGAAAAACGGCAAGGGAGCAGTTGATGATCGAGTGGTTGGCAAGCGAAAGGCCGCTCTAAAGCCTGACAAGAGCAGTGCAAAAATGACCAAGAAGGCGAGGAATGCCAAGAAAGATCCCAACAAACCAAAAAGACCGCCCAGTGCTTTTTTTGTTTTCCTTGAGGAGTTCAGAAAGATCTTTAAGGCAGAAAATCCTAATGTGAAGGCTGTATCAGCCGTGGGGAAGGCTGGAGGAGAGAAATGGAAATCTATGACTCCTGCTGAGAAAGCTCCTTATGAAGCCAAGGCTGCAAAAAAGAAAGCTGAGTATGAAAAACTCATGAATGCATATAATAAAAAGCAGACAAACCCAGTCAATGACAGAGATGAGGAATCGGATAAGTCCAAGTCTGAAGTGCATGATGAAGAGGATTATGCCAGTGGAGAGGAAGCACACCAAGAAGAGGAGGATGACGAAGACGAGGATGATGAAGAGTATGATGACTAA 489 0.4438 MKNGKGAVDDRVVGKRKAALKPDKSSAKMTKKARNAKKDPNKPKRPPSAFFVFLEEFRKIFKAENPNVKAVSAVGKAGGEKWKSMTPAEKAPYEAKAAKKKAEYEKLMNAYNKKQTNPVNDRDEESDKSKSEVHDEEDYASGEEAHQEEEDDEDEDDEEYDD 162
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1851 162 Coils Coil 94 117 - -
Alju11g1851 162 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 43 112 IPR009071 -
Alju11g1851 162 SUPERFAMILY HMG-box 29 113 IPR036910 -
Alju11g1851 162 MobiDBLite consensus disorder prediction 1 47 - -
Alju11g1851 162 Coils Coil 146 162 - -
Alju11g1851 162 Pfam HMG (high mobility group) box 43 112 IPR009071 -
Alju11g1851 162 Gene3D High mobility group box domain 26 129 IPR036910 -
Alju11g1851 162 MobiDBLite consensus disorder prediction 1 44 - -
Alju11g1851 162 MobiDBLite consensus disorder prediction 142 162 - -
Alju11g1851 162 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 2 147 IPR031061 -
Alju11g1851 162 MobiDBLite consensus disorder prediction 93 108 - -
Alju11g1851 162 MobiDBLite consensus disorder prediction 117 141 - -
Alju11g1851 162 MobiDBLite consensus disorder prediction 75 162 - -
Alju11g1851 162 SMART hmgende2 42 113 IPR009071 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Alju11g1851 Alju-ChrAlju11 39453240 39455220 Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Alju11g1851 HMG_box 4.3e-24 CL0114