Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1849 ATGGGGTTTTTCCTAGAAAGACGAAGAAAACAAAAGCCGGGGTCTTTCAAGGATTCTCTTAAAGCTCTTGAAGCTGATATTCACTTCGCCAATGCCCTAGCTTCTGATTATCCAAGAGACTTCGATGGTGCCTGCCTCCGAATGAGATTATCTTACAGTCCAGCTGCTCAATTATTCCTTATACTGTTTCAGTGGAGTGATTGCCACCTTGCTGGAGCTTTTGGATTGCTTAGAGTTCTCATATACAAGGCGTATGACAATGGGAAGACAAAAACCACAGTTTATGAAAGAAAAGCAAGTCTGAAGCAGTTCTATGGTGTAATCTTGCCCACTTTATTGCAACTACAAAGAGGAATCACTGTTGCTGAAGACAGGAGACAAAAAGATTTATGTGCTACTAAGTATAAGTCAGAAGATGCAATAAACAAAAGAAAGATTTCTGATATTGACCTAGAGAGAGAAAATGAATGTGACATTTGCATGGAGATGAAAAGCAGGGTTGTATTGCCTATATGCAACCACTTAATATGCATAAAATGTTACCGAGACTGGCATGCACGATCTAAATCTTGCCCGTTCTGTCGGGTAAATCTGACACGGGTTAACTCAGGTGACCTATGGATATACATAAGCAGAAATGAGACAGATGACTTGGATTCAGTCATCAAGGAGAATGTAAATAGGCTATTTATGTACATTGAGAAGTTGCCTCACGTAGTTCCAGATCCTATTTTCACATCTCATCCTCAGCGTTGGTAA 759 0.4005 MGFFLERRRKQKPGSFKDSLKALEADIHFANALASDYPRDFDGACLRMRLSYSPAAQLFLILFQWSDCHLAGAFGLLRVLIYKAYDNGKTKTTVYERKASLKQFYGVILPTLLQLQRGITVAEDRRQKDLCATKYKSEDAINKRKISDIDLERENECDICMEMKSRVVLPICNHLICIKCYRDWHARSKSCPFCRVNLTRVNSGDLWIYISRNETDDLDSVIKENVNRLFMYIEKLPHVVPDPIFTSHPQRW 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1849 252 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Alju11g1849 252 SMART ring_2 157 194 IPR001841 -
Alju11g1849 252 SUPERFAMILY RING/U-box 139 200 - -
Alju11g1849 252 ProSiteProfiles Zinc finger RING-type profile. 157 195 IPR001841 -
Alju11g1849 252 PANTHER RING FINGER PROTEIN 41, 151 14 244 - -
Alju11g1849 252 FunFam RING/U-box superfamily protein 138 204 - -
Alju11g1849 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 226 IPR013083 -
Alju11g1849 252 Pfam Zinc finger, C3HC4 type (RING finger) 154 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1849 Alju-ChrAlju11 39431856 39434703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1849 140 196 C3H Transcription Factor Family AT1G74990 31.667 1.46e-06 45.1