Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju11g1840 | ATGCAAGACCCACAGCATTCTACCACTGCGATTCCTTCTTCTCCCGCTATTGCTTCGTCATCTCCGACCACTTCACAGGTCCGCCAAGAGGAACACGGAATCGGCCACCCTCCATTTCAGTCACCTGAGTCCGACGACGCACAACCCCGGCATATGCTCCTCAACTTTGGTGCAATCGATTGGGATTTCGCCCATGTGCCTTGGCTTGCTAGGGATGATGCCTGGTCTTGTCTTGTGGTACTCTTGACCTTTTGGTTATTCGTTTCCATGACTATGATTCTGGGAGTTTATGGGCCTATAACCCTATTTCTTAGCCCCAATTCGTCTATTCTTCTCCAACCCAGCCCTTTATTCATCCAATCTATCAAGGTAGAAAACTTGGTTGGATCAGAGCCAGGACTTTTGCTCTATGGTACACACGGGTCTCCATCTCTTGATGTTGTTACCAACTGGGAAGAAAGTTATAGTGCATCCATTTCATCTTTTACAAGCAAGGCAAGTATGTTTTCATCCTTTTGTAATCTCGAATGGAAATATTACTTGAATAGAGGATCTCAAGTGAATATTTCGTATCACCTGAGCTCTGAGAGATCCTCTATTTATCTATTGATCGTTGAAGGGAATGATGGCCTTACCCAGTGGCTTGAAGACCTAACATATCCTAATAGCACTCTCTCGTGGAACGTAGTCCATGGAACTGGCGTGTTTACACAAGACATATATCTTTCATCAAGCTATTATGTGATAGCAAGAAATTTGGATGAGGAAGTTGAGGTCAAATTGAGCATCAAAGTAAGAGCCTTCTCGTACAATACAACCAAAGCTTACTATAAATGTGCCTTGATGAATAATTCCTGTCGTCTTAATATCTTCTTTCCTGATGGGAATGCAGCTATTTTAACTTCTGATTCACAAGAGAATACTTCAAGGGATGAGTGGCGTGTCAGATTGTCCTTTGGACCAAGATGGATCTCATATATTCTTGGCATTGGCGGAATGACTTTGCTGATGTATTTGTGCTTCACCTTAATAGAGAAGTTCCAGCAAGCTAGAGCAGGAGTTCAACTTGGGGGAATAGCAACTCAGAGAGCCCCTTTGCTTTCTCACAAAGATGACGATCTTTCAAGTTGGGGTTCATCTTATGATTCCATGTCACGTGACGAGGAGGATCTTGACTTTCTTACAGTGGGTTCCATTAACGGAAAGTCTTTAGGTGAGGGTGAAACCAGTAATAATACGCGGCGTCTTTGTGCTATTTGCTTTGATGCTCCAAGGGACTGCTTCTTCCTTCCATGCGGACACTGTGTTGGTTGTTTTGAATGTGGAAACAGGATAGCAGAAGCTGATGGGACTTGCCCTGTTTGTGGTAGGAACATCAAGAAAGTAAGGAAGATTTTTAATCCTCATGGTCCTTCCCTTCTATTCCTCGGACCGGTGACTGGGCACACACTCCGGCCACGACACGCAGCGATACGGAGAGTGAGAGCGAGAGTGAGAGAGAAAGGAGGCATGGGCGTCGACTACTACAAGATTCTTCAGGTGGACCGTAATGCCAAAGACGATGATCTTAAGAAAGCGTATCGAAAGCTTGCCATGAAGTGGCACCCTGATAAAAACCCTAACAACAAGAAAGAGGCTGAAGCTAAATTCAAGCAAATCTCCGAGGCTTACGATGTTCTGAGTGATCCACAAAAGCGAGCAGTGTATGACCAATACGGTGAGGAGGGATTGAAGGGACAGGTTCCACCTCCAGGTTCCGGATTTTCAGGTAGTTCTGATGGCGGTCCAACTATGTTCAGGTTCAACCCCAGGAGCGCAGACGATATATTTTCAGAGTTCTTTGGGTTTTCCAGGCCCTTTGGTGGAATGGGTGATATGGGTGGCCGTGCTGGTGCTTCTGGGTTTCCCCGTGGTATGTTTGGCGAAGATATTTTCACTTCATTTAGGAGTGGTGCTGGAGAGGGCTCTGGACATATGCCAAGGAAAGGTGCACCCATCGAACGAAACCTGCCATGCAGTTTGGAGGATTTGTACAAAGGAACGACTAAGAAAATGAAGATTTCGAGGGGTGTTACCGATTCTAGTGGGTGA | 2091 | 0.4553 | MQDPQHSTTAIPSSPAIASSSPTTSQVRQEEHGIGHPPFQSPESDDAQPRHMLLNFGAIDWDFAHVPWLARDDAWSCLVVLLTFWLFVSMTMILGVYGPITLFLSPNSSILLQPSPLFIQSIKVENLVGSEPGLLLYGTHGSPSLDVVTNWEESYSASISSFTSKASMFSSFCNLEWKYYLNRGSQVNISYHLSSERSSIYLLIVEGNDGLTQWLEDLTYPNSTLSWNVVHGTGVFTQDIYLSSSYYVIARNLDEEVEVKLSIKVRAFSYNTTKAYYKCALMNNSCRLNIFFPDGNAAILTSDSQENTSRDEWRVRLSFGPRWISYILGIGGMTLLMYLCFTLIEKFQQARAGVQLGGIATQRAPLLSHKDDDLSSWGSSYDSMSRDEEDLDFLTVGSINGKSLGEGETSNNTRRLCAICFDAPRDCFFLPCGHCVGCFECGNRIAEADGTCPVCGRNIKKVRKIFNPHGPSLLFLGPVTGHTLRPRHAAIRRVRARVREKGGMGVDYYKILQVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLKGQVPPPGSGFSGSSDGGPTMFRFNPRSADDIFSEFFGFSRPFGGMGDMGGRAGASGFPRGMFGEDIFTSFRSGAGEGSGHMPRKGAPIERNLPCSLEDLYKGTTKKMKISRGVTDSSG | 696 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju11g1840 | 696 | SMART | dnaj_3 | 506 | 565 | IPR001623 | - | |
| Alju11g1840 | 696 | FunFam | E3 ubiquitin-protein ligase APD2 | 406 | 467 | - | - | |
| Alju11g1840 | 696 | CDD | DnaJ | 507 | 562 | IPR001623 | - | |
| Alju11g1840 | 696 | Pfam | Domain of unknown function (DUF4793) | 236 | 340 | IPR032010 | - | |
| Alju11g1840 | 696 | PANTHER | OS05G0521000 PROTEIN | 66 | 467 | - | - | |
| Alju11g1840 | 696 | Pfam | Zinc finger, C3HC4 type (RING finger) | 414 | 462 | - | - | |
| Alju11g1840 | 696 | ProSiteProfiles | Zinc finger RING-type profile. | 417 | 455 | IPR001841 | - | |
| Alju11g1840 | 696 | Gene3D | - | 656 | 696 | - | - | |
| Alju11g1840 | 696 | ProSiteProfiles | dnaJ domain profile. | 507 | 573 | IPR001623 | - | |
| Alju11g1840 | 696 | PRINTS | DnaJ domain signature | 565 | 584 | IPR001623 | - | |
| Alju11g1840 | 696 | PRINTS | DnaJ domain signature | 545 | 565 | IPR001623 | - | |
| Alju11g1840 | 696 | PRINTS | DnaJ domain signature | 509 | 527 | IPR001623 | - | |
| Alju11g1840 | 696 | PRINTS | DnaJ domain signature | 527 | 542 | IPR001623 | - | |
| Alju11g1840 | 696 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
| Alju11g1840 | 696 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 401 | 474 | IPR013083 | - | |
| Alju11g1840 | 696 | Pfam | Domain of unknown function (DUF4792) | 133 | 211 | IPR032008 | - | |
| Alju11g1840 | 696 | SMART | ring_2 | 417 | 455 | IPR001841 | - | |
| Alju11g1840 | 696 | ProSitePatterns | Nt-dnaJ domain signature. | 550 | 569 | IPR018253 | - | |
| Alju11g1840 | 696 | Pfam | DnaJ domain | 507 | 570 | IPR001623 | - | |
| Alju11g1840 | 696 | SUPERFAMILY | RING/U-box | 416 | 466 | - | - | |
| Alju11g1840 | 696 | Gene3D | DnaJ domain | 506 | 624 | IPR036869 | - | |
| Alju11g1840 | 696 | SUPERFAMILY | Chaperone J-domain | 506 | 617 | IPR036869 | - | |
| Alju11g1840 | 696 | FunFam | DnaJ subfamily B member 13 | 506 | 624 | - | - | |
| Alju11g1840 | 696 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju11g1840 | Alju-ChrAlju11 | 39315744 | 39328252 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju11g1840 | 508 | 572 | C2H2 Transcription Factor Family | AT1G74250 | 37.681 | 3.17e-08 | 55.1 |