Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1837 ATGGCTTCTAGTCCACGCACCGTGGAAGAGATCTTCAAGGATTATAGTGCTCGAAGAGCCGGTGTTGTTCGTGCTTTGAGTCAAGATGTGGATGAATTTTACGGACTCTGTGATCCAGAAAAGGAGAATTTATGCCTTTATGGACATCCAAATGAAACCTGGGAAGTAACTCTGCCAGCAGAGGAAGTTCCCCCGGAGCTTCCTGAGCCAGCTCTAGGAATCAATTTTGCTAGGGATGGCATGATGCGCAGGGACTGGCTTTCCCTTGTTGCTGTTCATAGTGATTCATGGCTGCTTTCTGTGGCATTTTATCTCGGGGCCCGTCTCAACCGCAATGAAAGGAAGCGTTTATTTAGCTTGATCAATGATCTTCCCACTGTCTTTGAAGTTGTGACTGAGAGAAAGGCTATAAAGGACAAGCCAACTGTGGACAGTGGAAGCAAGGCCAGGGGAAGCTCCAAGAGATCAATTGATGGGCAAGTTAAAGGCAATCCCAAGTTTGCAGATGAGGGTTATGAGGAGGACGAAGATGAGCATAGCGAAACCCTTTGTGGGAGCTGTGGTGGAAACTACAATGCCGATGAATTTTGGATTGGCTGCGATGTCTGCGAGAGGTGGTTTCATGGGAAATGTGTGAAGATCACCCCTGCTAAGGCTGAGAGCATAAAGCAATACAAATGTCCATCTTGCATGAGGCGGGGCAAGCCCTAG 711 0.4796 MASSPRTVEEIFKDYSARRAGVVRALSQDVDEFYGLCDPEKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMMRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKAIKDKPTVDSGSKARGSSKRSIDGQVKGNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDVCERWFHGKCVKITPAKAESIKQYKCPSCMRRGKP 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1837 236 CDD PHD_AL_plant 183 233 IPR044104 -
Alju11g1837 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 231 IPR013083 -
Alju11g1837 236 ProSiteProfiles Zinc finger PHD-type profile. 181 233 IPR019787 -
Alju11g1837 236 SUPERFAMILY FYVE/PHD zinc finger 172 234 IPR011011 -
Alju11g1837 236 ProSitePatterns Zinc finger PHD-type signature. 184 230 IPR019786 -
Alju11g1837 236 PANTHER CPG BINDING PROTEIN 4 232 IPR045104 GO:0006355|GO:0042393
Alju11g1837 236 MobiDBLite consensus disorder prediction 139 174 - -
Alju11g1837 236 FunFam PHD finger alfin-like protein 176 232 - -
Alju11g1837 236 Pfam PHD-finger 184 232 IPR019787 -
Alju11g1837 236 SMART PHD_3 183 231 IPR001965 -
Alju11g1837 236 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1837 Alju-ChrAlju11 39307996 39310664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1837 2 230 Alfin-like Transcription Factor Family AT5G05610 79.565 1.47e-120 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Alju11g1837 Alfin 7.4e-68 No_clan