LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju11g1767	ATGAATATCAATTTTGAGAATTCTAAACAGACTTCTTTTATGGATGGTAACTGTAGGAACAAGACATCGCGTAGGAGACAAAGAAGTGCGAGTGGCTTTGTAACAGACACTCTTGAGAAGTGGAAGAAGTACAACAGTGAGCTTGAGTTTGTCGAAAATGGAGCAAAGAAAGCAAGTCACAGAGTGCCAGCGAAAGGCTCAAGAAAAGGATGCATGAGAGGCAAAGGTGGGCCTCAAAACTCAGATTGCAACTACAGAGGAGTGAGACAGAGGATTTGGGGCAAATGGGTGGCAGAAATTCGCGAACCCATTGCTGGAAATCACAGTAACTTGGGAAACAAGAAACCAAATCGCCTATGGCTCGGCACTTTCTCCACTGCACTTGAAGCTGCTCTTGCTTATGATAAAGCAGCCAAAGCCATGTACGGTCCTTGCGCTCGCCTGAACTTTTCTGAGTATAATATGGAAGGAGAAGTAGGAGAAGTAGAAGAAGAAGAAGAACCCACATGCTCTAATGAGGAAACAGAGAAGAAACATGAGGTTGTTCTGGTGAAGACTGAAGAAGAAACAGAGGATTTTGGTGTCAATGAAAGTGAAGCTTCCTTTGGGAAGAAGCAGATGGAGGAAATGACTTGTGAGATTCTGGGATTTTGTTCATCTGGTGAGGAATATAAAGCTTCAACAGAGAGAAAATTTGAAGATGAGGAGGGTTTGAACAATTCCTGTGATGGAAACTCCATGTTTGAAGAAAAAGAAACTGATGAGTGGCAGAGTGGTCATTTGCCTCTGTATCTGAATAACATGAAGGAGGCAGACCAGGAAGTGGGCTATTATGACTACAGTTTCTTGAGACCTGATTATGACTTTGGCTTATTGGAAGAGAAAAACTTACTTGGTATATGGTTTCCACATATAGGTTCTTAA	924	0.4221	MNINFENSKQTSFMDGNCRNKTSRRRQRSASGFVTDTLEKWKKYNSELEFVENGAKKASHRVPAKGSRKGCMRGKGGPQNSDCNYRGVRQRIWGKWVAEIREPIAGNHSNLGNKKPNRLWLGTFSTALEAALAYDKAAKAMYGPCARLNFSEYNMEGEVGEVEEEEEPTCSNEETEKKHEVVLVKTEEETEDFGVNESEASFGKKQMEEMTCEILGFCSSGEEYKASTERKFEDEEGLNNSCDGNSMFEEKETDEWQSGHLPLYLNNMKEADQEVGYYDYSFLRPDYDFGLLEEKNLLGIWFPHIGS	307

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju11g1767	307	PRINTS	Ethylene responsive element binding protein signature	85	96	IPR001471	GO:0003700\|GO:0006355
	Alju11g1767	307	PRINTS	Ethylene responsive element binding protein signature	117	133	IPR001471	GO:0003700\|GO:0006355
	Alju11g1767	307	CDD	AP2	83	150	IPR001471	GO:0003700\|GO:0006355
	Alju11g1767	307	SUPERFAMILY	DNA-binding domain	84	151	IPR016177	GO:0003677
	Alju11g1767	307	Gene3D	AP2/ERF domain	84	152	IPR036955	GO:0003700\|GO:0006355
	Alju11g1767	307	MobiDBLite	consensus disorder prediction	1	31	-	-
	Alju11g1767	307	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	21	257	-	-
	Alju11g1767	307	SMART	rav1_2	84	157	IPR001471	GO:0003700\|GO:0006355
	Alju11g1767	307	MobiDBLite	consensus disorder prediction	1	18	-	-
	Alju11g1767	307	FunFam	Ethylene-responsive transcription factor 2	83	152	-	-
	Alju11g1767	307	Pfam	AP2 domain	83	143	IPR001471	GO:0003700\|GO:0006355
	Alju11g1767	307	ProSiteProfiles	AP2/ERF domain profile.	84	151	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju11g1767	Alju-ChrAlju11	37794172	37795095	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju11g1767	22	217	AP2-EREBP Transcription Factor Family	AT2G40340	40.930	1.34e-43	150

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Alju11g1767		AP2	1.5e-13	CL0081