Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1712 ATGAGTGTTGCCGCCCCTGGGCAGCTGAACCTTACTGAGTACCCTACATGGGGATCCAGAAGTGTTGATTGTTTTGAAAAGTTGGAGCAGATTGGCGAGGGAACTTATGGCCAAGTTTACATGGCTAGAGAAATCAAAACAGGTGAACTTGTTGCTTTGAAGAAAATAAGAATGGAAAATGAGAGAGAGGGGTTTCCCATAACTGCCATACGGGAAATCAACATTTTAAGGAAATTAAAACATGAAAATGTTATTAAGCTGAAAGAGGTAGTGACATCACCAGGCCCTGAGAAAGGTGAGCAAGGGGAGCCAGATGGTAACAAATATAAAGGTGGTATCTATATGGTATTTGAATACATGGACCATGATTTGACTGGTCTTGCTGAACGACCTGGGATGAGATTTTCAGTTCCTCAAATCAAGTGTTATATGACACAGCTTTTGAGGGGGCTTCATTATTGTCATGCAAGTCAAGTACTTCATCGTGATATAAAAGGATCCAATCTTCTTATAGACAATGAAGGTAATCTGAAGCTTGCAGATTTTGGACTTGCACGTTCAATTTGTAAAGGCCACAATGCAAAACTCACAAATCGTGTTATAACATTATGTTACAGGCCCCCAGAGCTGCTGCTAGGAGCAACAAAGTATGGGCCTGCTGTTGATATGTGGTCAGTTGGATGCACCTTTGCTGAACTTCTTCATGGCAAGCCTATCCTCCCTGGAAAGAATGAGCCAGATCAACTAAACAAAATTTTTGAGCTGTGTGGAACACCAGATGAGGTGAACTGGCCTGGGGTTTCAAAGTTTCCGTGGTATAATCAATTTAAGCCAACAAGACCAATGAAAAGACGCCTGAGAGAATCTTTCAGACATTTTGATCATCATGCTTTAGATTTGTTGGAGAGGATGCTGACACTTGATCCTGCTCAGAGAATTACTGCTAAGGATGCACTTGATGCTGAATATTTCTGGACTGATCCATTTCCATGCGATCCGAAGGGTTTACCCAAATATGAGTCATCACATGAGTTCCAGACAAAGAAAAGGCGCCAGCAACAGCGACAACTTGAAGAGAATGCTAGACGTCAGAGAATGCAGCAACCCCAGCAACCTACTCATCTTCCCCCCATTCAGCAGCCCGGGCCACCACACACCCAAATGCGGCCACCTCTAAACCCAGCAACGCCTGGCCCGCAGCCTGCAGGGCCGGGCCATCATAATGGGAGGCCTAGAGGTCCCTTTGGTGGGCCTGGTAGATACCCTCCTGGGGGGAACCCTGGTTGGGGATACAATCACCCAAACCATGGAGGTCGAGGTGGTGGAGGTGGCTATGGCAGTGGACCATTTCCTCCTCAAGGCTGGGGAGCACCTTATCGGTCAAGTGGCATGCCTGGCGGTGGTCCTCGTGGTGGCAGCTATGGAGTTGGAACGCCGAATTATTCTCAAGGCGGTCCATACGGTGGATCAGGAGCTGGCTTTGGTTCAAACATGATGGGTGGAAACCGCAATCAACATTATGATTCAATGAGTATATACAGTCTGGAAATCATATTATCAGCACCTGGATGTCACGGTAAAGCAATTGTGATTGCTTACTCTGCCTGA 1608 0.4627 MSVAAPGQLNLTEYPTWGSRSVDCFEKLEQIGEGTYGQVYMAREIKTGELVALKKIRMENEREGFPITAIREINILRKLKHENVIKLKEVVTSPGPEKGEQGEPDGNKYKGGIYMVFEYMDHDLTGLAERPGMRFSVPQIKCYMTQLLRGLHYCHASQVLHRDIKGSNLLIDNEGNLKLADFGLARSICKGHNAKLTNRVITLCYRPPELLLGATKYGPAVDMWSVGCTFAELLHGKPILPGKNEPDQLNKIFELCGTPDEVNWPGVSKFPWYNQFKPTRPMKRRLRESFRHFDHHALDLLERMLTLDPAQRITAKDALDAEYFWTDPFPCDPKGLPKYESSHEFQTKKRRQQQRQLEENARRQRMQQPQQPTHLPPIQQPGPPHTQMRPPLNPATPGPQPAGPGHHNGRPRGPFGGPGRYPPGGNPGWGYNHPNHGGRGGGGGYGSGPFPPQGWGAPYRSSGMPGGGPRGGSYGVGTPNYSQGGPYGGSGAGFGSNMMGGNRNQHYDSMSIYSLEIILSAPGCHGKAIVIAYSA 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1712 535 SMART serkin_6 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju11g1712 535 MobiDBLite consensus disorder prediction 335 479 - -
Alju11g1712 535 FunFam Cyclin-dependent kinase C-2 12 121 - -
Alju11g1712 535 CDD STKc_CDK9_like 25 324 - -
Alju11g1712 535 MobiDBLite consensus disorder prediction 337 362 - -
Alju11g1712 535 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Alju11g1712 535 ProSiteProfiles Protein kinase domain profile. 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju11g1712 535 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Alju11g1712 535 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
Alju11g1712 535 Gene3D Transferase(Phosphotransferase) domain 1 122 363 - -
Alju11g1712 535 Pfam Protein kinase domain 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju11g1712 535 SUPERFAMILY Protein kinase-like (PK-like) 17 332 IPR011009 -
Alju11g1712 535 PANTHER CELL DIVISION PROTEIN KINASE 23 330 - -
Alju11g1712 535 MobiDBLite consensus disorder prediction 374 401 - -
Alju11g1712 535 FunFam Cyclin-dependent kinase C-2 122 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1712 Alju-ChrAlju11 37041026 37046103 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1712 1 482 Core Cell Cycle Gene Families AT5G10270 73.265 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Alju11g1712 Pkinase 5.2e-72 CL0016