LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju11g1685	ATGCTTCTTGTGAAGTTAAAGGTTTTCAACTGTTTGGTCTTTTTACTGGATGTAATGGAAGCTGAAGAATTGAGTTTGAAAATGGTGTCACGAACCTGCATGAATGCGGCTTGTGCCACCTCGACGTCGGTTCAGTGGCGGAAAGGATGGGCCCTGAGATCCGGCGAATTCGCTGATCTCTGTGATAAGTGCGGCTCTGCCTATGAGCAATCAACATTTTGCTATGTGTTCCACTCAAAAGATTCTGGTTGGAGAGAGTGTGTGTCATGTGGCAAGCGTCTTCATTGTGGATGCATTGCTTCTCGAAATTTGCTTGAGCTGCTGGATACCGGTGGTGTAAGCTGCATTGATTGTGCAAGAGATTCAGGACAACCTAGTTCAACTATGGAAAAGCCTGATGGATCTAGTACATCAAAACTTGAAATTGGAAGCGAACTACAATGCTCATTGGTTTCTAACCATTTAGGAAGCAATGTTGAGAAAGTGAGAGGGGTGCAAGTTGGGGATTATGCAGAGAATGATGGGCTTAGGAGTTGGCTCCATCCTCATAACGGTGCTACAAATGGGCCTCCTATGCGATTAAAACAAGAAGTTATGCCTTTTATTGGGGAGCTTGGAAGCACTTCAATATCACAATTCCATCCAGAGTCTAATGGATCATCTAAGGCTGTCAAAGTTGACAACTGCAAGACAGATGTAGAAATAAGAGATATGTATGAATCATTTGCTCAAACAAACTTGAGTATGACTCTTGGTGCTCCTTTAGGAAATTCAAACTCCGTTCGTAATGATGTTTTTGATGAGAGGGAGCACAGTAAGACATCATCTTCAACATTACCAGGGCCCAGATCTCGCCATCTCTTACCCAAGCCCCCCCGGTCAAGCTTGGAGGTAAATGCAGGGATGGTATCTCAAATTCGTGTTGCCAGGCCACCTGCTGAAGGACGGGGAAGGAATCAGTTACTTCCCCGTTATTGGCCTAGGATTACTGATCAAGAGTTGCAGCAAATCTCTGGAGATTCAAATTCAATCATTGTGCCATTGTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGCCGCTTGGTTCTTCCTAAGGCTTGTGCTGAAACTTATTTTCCTCCTATCTCTCAGCCAGAAGGCCTTCCCTTACGAATCCAAGATGTGAAAGGAAAAGAATGGGTATTCCAGTTTAGATTCTGGCCTAACAACAACAGCAGAATGTATGTTCTAGAAGGGGTAACTCCCTGCATACAGTCTATGCAGTTGCAAGCTGGGGACACTGTGACATTTAGTCGTATGGACCCTGAGGGAAAACTGATAATGGGGTTTCGGAAGGCTACAAATTCTTCTGCAGCACAGGAATCTCATCCACCTAATATTCCCAACGGCAATCGTTCAAGTGAAACTTCCTATCCTGGTGTTTATGAGAACTTGCCTGTTTTAAGTGGCTACTCTGGCCTTCTTCAGTCATTAAAAGGAAGTTCAGAAACCCACCTAAATGCACTGTCTAAAAAGTGGAGTTCAGCTTGTGGGGACGTGAATTGGCACAATATTGAGATGCCTGAAGGCAGGAAAAGAGAAGGATTGCTTCTGCCACCAGCGCTGGTTCCAGAGAAGAAAAGGACTCGTAATATTGGGCCAAAAAGTAAGAGATTGCTTATTGACAGCCAGGATGCATTGGAGCTGAAACTAACCTGGGAAGAGGCTCAGGATTTGCTCCGTCCACCACCAGCAGTTAAGCCAAGCATTGTCATGATCGAAGATCATGTATTTGAAGAATATGAAGAACCTCCTATCTTTGGGAAGAGAAGTGTATTTGTAGCCCGGTCAACTGGGATGCATGAACAATGGACTCAATGCGATAATTGCTCAAAATGGCGAAAGTTGCCCGTGGATGTACTTGTTCCCCCTAAGTGGACATGTGGGGACAATTCATGGGATCAGAGCAGGTGTTCATGTTCTGCCCCCAGCGAGCTCAGCCCAAGGGAACTAGATAATCTTCTGAGATTAAATAAGGAATTCAAGAAACAAAGAATGGCAGCTAGCCACAGGCTGTCCCTGGAGCAGCATGAATCTTCTGGACTGGATGCTCTGGCTAATGCTGCAATACTCGGAAACGATGTAGGTGACTCTAGCAGGACACCAGTTGCTACCACCACAAAACACCCTCGGCATAGACCTGGCTGCTCCTGCATTGTCTGCATCCAGCCACCCAGTGGAAAGGGAAAACACAAGCCTACATGCACTTGCAATGTATGTATGACGGTTAAACGTCGGTTTAAGACCCTGATGATGCGAAAGAAGAAACGTCAATCTGAACGGGAAGCAGAGATTGCTCAGAGAAACCAGCAATCATGTGGGCCGAGGGATGAATCAGAAGTAGAAAGCACTTCTAGAAATTTAACTCCAGCTGATGGTTGTGAGACTGAAGCAAGGGCACCAAATGAGTTGGACTCAAGAAGTCAAACAGATGTGGCTGAAACTAGCAAGGGACAGTTAGACTTGAATTGCGATCCTGATCGACATGACGTGCAAGCCGGCTCAAACAGTGTCAGCATGATGAGTCTACTTCAAGAAGCAAGTCTCCCTTTGGAGACATATCTGAAACAAAATGGTCTTGCTAGCTTGGCATCAGAGCAACAAGCAAATTCAGCTTCCAATGCGCAGGCGCAGACCACTAACGAGAGTGAGGGAAGACACAACGACGAGGACTGCCGTGCTGCTTCTGATGTTAAGGAGCAAGAAAGCAGTCATGAAGAGAACAGTGGTCAAGACAAAAACGAAAACAATCCCCCTGCATGA	2811	0.4561	MLLVKLKVFNCLVFLLDVMEAEELSLKMVSRTCMNAACATSTSVQWRKGWALRSGEFADLCDKCGSAYEQSTFCYVFHSKDSGWRECVSCGKRLHCGCIASRNLLELLDTGGVSCIDCARDSGQPSSTMEKPDGSSTSKLEIGSELQCSLVSNHLGSNVEKVRGVQVGDYAENDGLRSWLHPHNGATNGPPMRLKQEVMPFIGELGSTSISQFHPESNGSSKAVKVDNCKTDVEIRDMYESFAQTNLSMTLGAPLGNSNSVRNDVFDEREHSKTSSSTLPGPRSRHLLPKPPRSSLEVNAGMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSIIVPLFEKMLSASDAGRIGRLVLPKACAETYFPPISQPEGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSSAAQESHPPNIPNGNRSSETSYPGVYENLPVLSGYSGLLQSLKGSSETHLNALSKKWSSACGDVNWHNIEMPEGRKREGLLLPPALVPEKKRTRNIGPKSKRLLIDSQDALELKLTWEEAQDLLRPPPAVKPSIVMIEDHVFEEYEEPPIFGKRSVFVARSTGMHEQWTQCDNCSKWRKLPVDVLVPPKWTCGDNSWDQSRCSCSAPSELSPRELDNLLRLNKEFKKQRMAASHRLSLEQHESSGLDALANAAILGNDVGDSSRTPVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQQSCGPRDESEVESTSRNLTPADGCETEARAPNELDSRSQTDVAETSKGQLDLNCDPDRHDVQAGSNSVSMMSLLQEASLPLETYLKQNGLASLASEQQANSASNAQAQTTNESEGRHNDEDCRAASDVKEQESSHEENSGQDKNENNPPA	936

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju11g1685	936	ProSiteProfiles	Zinc finger CW-type profile.	614	664	IPR011124	GO:0008270
	Alju11g1685	936	MobiDBLite	consensus disorder prediction	781	807	-	-
	Alju11g1685	936	Pfam	CW-type Zinc Finger	619	661	IPR011124	GO:0008270
	Alju11g1685	936	MobiDBLite	consensus disorder prediction	899	928	-	-
	Alju11g1685	936	Gene3D	-	327	454	IPR015300	-
	Alju11g1685	936	MobiDBLite	consensus disorder prediction	881	936	-	-
	Alju11g1685	936	SUPERFAMILY	DNA-binding pseudobarrel domain	347	449	IPR015300	-
	Alju11g1685	936	FunFam	B3 domain-containing transcription repressor VAL1	327	454	-	-
	Alju11g1685	936	Pfam	B3 DNA binding domain	349	448	IPR003340	GO:0003677
	Alju11g1685	936	CDD	B3_DNA	347	448	IPR003340	GO:0003677
	Alju11g1685	936	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS07G0563300	30	887	-	-
	Alju11g1685	936	SMART	B3_2	349	449	IPR003340	GO:0003677
	Alju11g1685	936	Gene3D	-	617	673	-	-
	Alju11g1685	936	MobiDBLite	consensus disorder prediction	709	729	-	-
	Alju11g1685	936	MobiDBLite	consensus disorder prediction	881	898	-	-
	Alju11g1685	936	MobiDBLite	consensus disorder prediction	267	295	-	-
	Alju11g1685	936	ProSiteProfiles	B3 DNA-binding domain profile.	349	450	IPR003340	GO:0003677
	Alju11g1685	936	MobiDBLite	consensus disorder prediction	767	849	-	-
	Alju11g1685	936	MobiDBLite	consensus disorder prediction	449	472	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju11g1685	Alju-ChrAlju11	36656576	36662786	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju11g1685	31	904	B3 DNA Binding Superfamily	AT4G32010	50.731	0.0	827

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Alju11g1685		B3	3.1e-15	CL0405