Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1639 ATGATTAGGGTTAGGGCAATCACGCGTATGGAAGCGTCCCCCGACCCCGTCACTCCTCCGGTGACTTCCAGCTCGAATCGATACGGTATCCCATCTGCTTCTAATATTATTCAGGCGCCCTTATCGTTGTTGTTGGAGCATTTAGGGGTTATTCGAAGCAGGTCTAATCAACACGAGACTGAGCCCTTAATCAACAACAATCGACTGTCTTCTGGATTCCGTGATGCTCTTCGGAATCGCCTTGACGAGTCATCGGTCATTCCTAACGATGGGGAGGTGTCGATTAGTATTATTGGGGCTGGGGAACAACGACTTGACAGGGAAGGCGAAGTGAGGGAAGTTCTGTCCCAGAATGAAGTATCGATACCGGCGCAACCCTTGGCTGGGATGCCACACTCTGCGACTCTTCCTCCTGCGTTGGCCAATCAGGAACTTTCTAGGACTGAGCATGTTGTAGAAGAGGGTGTTTCCCAATCTGTGAATGCAAATTCTGATGCTGAGGTTGGTGATGGAGTTGGTGCTAACGCTAGGGATTCTTCATCCCAGAGGTATGATATTCAACAGGCTGCTCGCTGGATTGAGCAGGTCCTGCCTTTTTCCTTACTGTTGCTGGTCGTCTTCATTCGGCAGCATTTGCAAGGGTTTTTTGTTACAATTTGGGTCACGGCTGTCCTTTTCAAGTCAAATGACATTTTGCGGAAGCAGACAGCTTTGAAGGGGGAGAGGAAAGTTCCTGTATTGATTGCCATTTCTGTTGCATTTACGTTGCACGTGGTTGGTGTATATTGGTGGTGTCAGAATAACGATATGCTATACCCATTGGCCATGCTTCCTCCCAAAGTCATACCTCCATTCTGGCATGTTATTTTCGTCATCACAGTGAACGATGCTTTGGTCCGCCAGGCAGGAATGGTAGTCAAGTGTATTTTGTTGATGTATTACAAGAATGGCAGAGGCCGAAATTATCGTAAGCAGGGCCAAATGTTGACTCTAGTTGAGTACCTACTCCTTCTTTACCGTGCCTTGTTGCCAACTCCAGTATGGTATCGGTTCTTCTTGAACAAAGAATACGGAAGTTTCTTTTCTTCATTGATGACAGGATTATATCTAACATTCAAGCTGACATCAGTCATCGAAAAGGTGCAATCCTTTTTTGCTTCTGTGAAGGCATTGTCACGTAAAGAAGTGCACTATGGGGCTTATGCAACATCAGAACAGGTGAATGCCGTTGGTGATCTTTGTGCTATTTGCCAGGAAAAGATGCATACCCCAATCTTACTTTCCTGTAATCACATCTTCTGTGAAGAATGTGTATCAGAATGGTTTGAGAGGGAAAGGACCTGCCCCTTGTGCAGGGCTTTGGTGAAACCTGCAGATCTTAAATCATTTGGGGATGGTTCTACTAGTTTGTTTTTCCAGTTATTCTAA 1428 0.4587 MIRVRAITRMEASPDPVTPPVTSSSNRYGIPSASNIIQAPLSLLLEHLGVIRSRSNQHETEPLINNNRLSSGFRDALRNRLDESSVIPNDGEVSISIIGAGEQRLDREGEVREVLSQNEVSIPAQPLAGMPHSATLPPALANQELSRTEHVVEEGVSQSVNANSDAEVGDGVGANARDSSSQRYDIQQAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWVTAVLFKSNDILRKQTALKGERKVPVLIAISVAFTLHVVGVYWWCQNNDMLYPLAMLPPKVIPPFWHVIFVITVNDALVRQAGMVVKCILLMYYKNGRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSFFSSLMTGLYLTFKLTSVIEKVQSFFASVKALSRKEVHYGAYATSEQVNAVGDLCAICQEKMHTPILLSCNHIFCEECVSEWFERERTCPLCRALVKPADLKSFGDGSTSLFFQLF 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1639 475 ProSitePatterns Zinc finger RING-type signature. 429 438 IPR017907 -
Alju11g1639 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 389 462 IPR013083 -
Alju11g1639 475 Pfam Zinc finger, C3HC4 type (RING finger) 412 455 - -
Alju11g1639 475 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 23 475 IPR044235 GO:0061630|GO:1904294
Alju11g1639 475 SUPERFAMILY RING/U-box 406 457 - -
Alju11g1639 475 CDD RING-HC_RNFT1-like 412 452 - -
Alju11g1639 475 ProSiteProfiles Zinc finger RING-type profile. 414 452 IPR001841 -
Alju11g1639 475 SMART ring_2 414 451 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1639 Alju-ChrAlju11 35735513 35739793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1639 24 475 C3H Transcription Factor Family AT5G01960 65.795 0.0 598