Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1543 ATGTACTGTGTTTCTAGCGTTCTGGATGAAAAGTTGATCCAGGATGGTTGTTTTCATTTATCGGATCATCATTTTTGTTTTATTTTTTACCTCCATTTTCTTCTGCCAGTGGGTGCAGTAATATCATTACTCAAGATGAGTAATGAGCGTACTCTTAGAAGTTACCGACGAAGGAAGGCTGTTTTGGATTTGGATCTTAATAGAGCTCCACCTGAGAATCGGGAGCAAGAGGGCCCTTCGAATCCACAGGAACCTCATTTAGTTCAAGCTCTTCAGCAACCACAAGTTGTACAGCCTATTGATGTGGAGGCCATTGAAGATGATGTCATTGAATGTACAGCAAGTGCTTTTGCTGAAGCTAAAAACAATTCAAGAAGGAATCGTGGGAGGACTGTAGTTGATGTGGATTTGGATTATCAGAGTTGGATAACTGAAAATGCTACCAACAATTCCAGAAGAGATTCTTCGAACCAAACAATTCTTAATTCTGATGTATGTATAAACTTGGAAGGCAGTGGCAGTTCTGAGTGGGGGAATGATAAAAAGGTGCCTAAACCTCCAATGGAGCCTGTTTTTAGCTGTCCAATATGTATGGGCCCATTTATTGAAGAAGTGTCAACAAGGTGTGGTCATATTTTCTGTAAGAGTTGCATCAAGGCTGCTATAAGTGCACAGGGTAAATGCCCTACATTTGAAACAAGACTGGATTTTAGGAGAATCAGGAGTGGAGGAAACCAAACAATACTTTGGAGGGAGTTACTTTGCAGTCTTTATCAGGATCTTAGTGGTAGTTGCTTTGGGATTTGTTTAATTTTCTATTGGGCCTCTTGA 831 0.4031 MYCVSSVLDEKLIQDGCFHLSDHHFCFIFYLHFLLPVGAVISLLKMSNERTLRSYRRRKAVLDLDLNRAPPENREQEGPSNPQEPHLVQALQQPQVVQPIDVEAIEDDVIECTASAFAEAKNNSRRNRGRTVVDVDLDYQSWITENATNNSRRDSSNQTILNSDVCINLEGSGSSEWGNDKKVPKPPMEPVFSCPICMGPFIEEVSTRCGHIFCKSCIKAAISAQGKCPTFETRLDFRRIRSGGNQTILWRELLCSLYQDLSGSCFGICLIFYWAS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1543 276 ProSiteProfiles Zinc finger RING-type profile. 194 232 IPR001841 -
Alju11g1543 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 265 IPR013083 -
Alju11g1543 276 SUPERFAMILY RING/U-box 187 235 - -
Alju11g1543 276 ProSitePatterns Zinc finger RING-type signature. 209 218 IPR017907 -
Alju11g1543 276 Pfam Zinc finger, C3HC4 type (RING finger) 194 230 - -
Alju11g1543 276 PANTHER ELFLESS, ISOFORM B 48 235 - -
Alju11g1543 276 SMART ring_2 194 231 IPR001841 -
Alju11g1543 276 MobiDBLite consensus disorder prediction 66 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1543 Alju-ChrAlju11 33518004 33521707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1543 44 240 C3H Transcription Factor Family AT5G48655 44.724 9.68e-38 130