Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1474 ATGGCAAAATCTGGCGTGGCGGCGGTGGACTCTGATCCGGCGGCGGCGGCGGCGGCGACGAAGGTGTTGGAGTTGAAGAATGAGTTGAACAGATTGGTGAATTCCATCGTCGACGATGAAGATTGCAGCATCCAAAACATTGATCAAGCTAGGGAAGTTCTTTCCTCTCTTAAGGACCTCAAGCTTAGAAAGAAATCATCGTCATCGCCATCTTCACAATCTTCGGATTTAAAGCTAAACAGAAATTCCGGTTTTCCGGAAGAATTTAAGTGCCCTCTTTCTAAGGAGTTGATGAGAGATCCTGTCATTGTGGCTTCTGGAAAGACATATGATAGGCCCTTTATTCAAAAATGGCTTAAAGCTGGGAACAGAACTTGTCCTCAAACACAGCTAGTCCTTTCACACACTGTCCTCACTCCAAATCACCTCATAAGGGAGATGATAGAACAATGGTGCAAGAACCATGGGGTGGAATTATCCAATCAGCTTCACTATATTTACAACGAGGAAGATGTAATAACAAACGCAGATCGTGATCATTTTCATTCTCTGATTGAGAAACTGTCGTCATCATCACTTTCTGAGCAGAAAGAAGCCGCGAAGCAGCTCCGGTTATTGACAAAGAAGATGCCTTTGTACAGAACACTCTTTGGCGAGACTCCACAAGCCATTTCTGAGATTCTCAAACCAATCTCTGCAAGCGATTCGTTCAACAACATTCATCCTGATCTCCAAGAAGATGTGATCACAACACTTTTGAACATCTCTATCCATGACAACAACAAGAAGCTTGTTGCAGAAACTCCCTCAGTGATTCCCCTCCTTGTCAAAGCCTTAAAATCAGGAACTACAGAAACCAGAACCAATTCTGCAGCTACCCTTTTTACTTTATCTGCTCTAGACTCGAACAAGGAGCTCATAGGGAAATTTGGCGCCTTAAAGCCATTAATTGACCTCTTAGAAGAAGGCCACCCGTTAGCCATGAAAGATGTTGCTTCAGCAATTTTCACCTTGTGTGTGTTTCATGAGAACAAGGCAAGAGCGGTGAGGGAAGGGGCGGTAAGCGTCATACTGAAGAAGATCTCAAGCCGGGTCTACGTCGACGAATTGCTCACGGTCCTCGCACTGCTCTCAAGTCATCAAAAGGCTGTTCAGGACATGGTAGATCTTGGAGCTGTTCCCAACTTGCTGAGCATCATGAGGGAGAGCAATTGCGAACGAAACAAGGAGAACTGCATAGCGGTTCTTCAAACTATATGTCAGTATGACAGAGCAAAGCTGAAGGAAATAAAAGAAGAGGAGATTTCATTCAGAACTATCACTGATCTTGCATTGAATGGAACTTCAAGGGCTAAGAGGAAGGCTAGTGGAATTCTTGAGAGACTGAATAGGGTTGTTAATATTACTCACACTGCATAA 1419 0.4419 MAKSGVAAVDSDPAAAAAATKVLELKNELNRLVNSIVDDEDCSIQNIDQAREVLSSLKDLKLRKKSSSSPSSQSSDLKLNRNSGFPEEFKCPLSKELMRDPVIVASGKTYDRPFIQKWLKAGNRTCPQTQLVLSHTVLTPNHLIREMIEQWCKNHGVELSNQLHYIYNEEDVITNADRDHFHSLIEKLSSSSLSEQKEAAKQLRLLTKKMPLYRTLFGETPQAISEILKPISASDSFNNIHPDLQEDVITTLLNISIHDNNKKLVAETPSVIPLLVKALKSGTTETRTNSAATLFTLSALDSNKELIGKFGALKPLIDLLEEGHPLAMKDVASAIFTLCVFHENKARAVREGAVSVILKKISSRVYVDELLTVLALLSSHQKAVQDMVDLGAVPNLLSIMRESNCERNKENCIAVLQTICQYDRAKLKEIKEEEISFRTITDLALNGTSRAKRKASGILERLNRVVNITHTA 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1474 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 158 IPR013083 -
Alju11g1474 472 SUPERFAMILY ARM repeat 168 462 IPR016024 -
Alju11g1474 472 SMART arm_5 300 340 IPR000225 GO:0005515
Alju11g1474 472 SMART arm_5 380 421 IPR000225 GO:0005515
Alju11g1474 472 SMART arm_5 258 299 IPR000225 GO:0005515
Alju11g1474 472 ProSiteProfiles U-box domain profile. 84 158 IPR003613 GO:0004842|GO:0016567
Alju11g1474 472 PANTHER U BOX DOMAIN-CONTAINING 25 462 - -
Alju11g1474 472 FunFam RING-type E3 ubiquitin transferase 171 468 - -
Alju11g1474 472 Pfam U-box domain 86 155 IPR003613 GO:0004842|GO:0016567
Alju11g1474 472 SUPERFAMILY RING/U-box 84 159 - -
Alju11g1474 472 Coils Coil 15 35 - -
Alju11g1474 472 SMART Ubox_2 88 151 IPR003613 GO:0004842|GO:0016567
Alju11g1474 472 Gene3D - 160 466 IPR011989 -
Alju11g1474 472 FunFam RING-type E3 ubiquitin transferase 84 158 - -
Alju11g1474 472 CDD RING-Ubox_PUB 86 138 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1474 Alju-ChrAlju11 31991978 31994601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1474 147 472 U-box Gene Family AT3G07360 60.000 2.75e-134 389