Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1472 ATGGGGCCAAATGCGGGTTCTTTATCGGCGGTGGCCAGACAGGCAGAGAAACTTCGAATAAACGGCAATAATTACTTCAAGAAAGATCGGTTTGGAGCTGCTATCGATGCTTATACGGAGGCAATTACTCTAATGCCTGATAATCCGGTTTATTTCACGAATCGTGCTCTATGCCATCGCAAGCGGAATGACTGGGAGAGAGTGGAGGAAGATTGTCGGAAAGCTATTCAACTTAATCACAAGTCAGTTAAGGCCCACTATATGTTGGGACTTGCTTTGCTGCAGAGACAAGAATATGCCAAGGGAATAACAGAATTAGAGAAGGCTTTGGATCTTGGGAGGGGAGCCAATCCTAAGGGCTATATGGTAGAAGAGATCTGGCAGGAGCTAGCAAAAGCAAAATACCAAGAATGGGAGCGTTCATCTACCAAGCGATCATGGGAATTGCAGAGCTTGAAAGAAGCTTTCGAGTCTGCTCTAAAGGAAAAGCATGTACATGACATCTCCCAGAAGGAAGGCTTTCTAGATGAACTTTCAACCAGCCCGTCAGAACAGCTAGCAGCTTTAGGAAGCGTATTCGGTAAAGCTGCAGAGGATGATGCGCCTACTGAGGTGCCAGATCACCTTTGCTGTAGAATTACACTTGAAATTTTCCGGGATCCTGTCATCACTCCAAGTGGTCTTACATATGAGAGGGCAGTGATTCTTGACCATCTTGACAAGGTGGGTAAATTTGATCCAGTGACTCGAGAACCACTTAATCCATCCCAGTTAGTGCCAAACTTGGCCATAAAGGAAGCAGTCCAGGCATTCTTAGACAAACATGGATGGGCCTACAATATAGATTAA 849 0.4535 MGPNAGSLSAVARQAEKLRINGNNYFKKDRFGAAIDAYTEAITLMPDNPVYFTNRALCHRKRNDWERVEEDCRKAIQLNHKSVKAHYMLGLALLQRQEYAKGITELEKALDLGRGANPKGYMVEEIWQELAKAKYQEWERSSTKRSWELQSLKEAFESALKEKHVHDISQKEGFLDELSTSPSEQLAALGSVFGKAAEDDAPTEVPDHLCCRITLEIFRDPVITPSGLTYERAVILDHLDKVGKFDPVTREPLNPSQLVPNLAIKEAVQAFLDKHGWAYNID 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1472 282 Pfam U-box domain 205 277 IPR003613 GO:0004842|GO:0016567
Alju11g1472 282 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 280 IPR045200 GO:0000209|GO:0061630
Alju11g1472 282 SMART tpr_5 15 48 IPR019734 GO:0005515
Alju11g1472 282 SMART tpr_5 83 116 IPR019734 GO:0005515
Alju11g1472 282 SMART tpr_5 49 82 IPR019734 GO:0005515
Alju11g1472 282 ProSiteProfiles TPR repeat profile. 15 48 IPR019734 GO:0005515
Alju11g1472 282 SMART Ubox_2 208 271 IPR003613 GO:0004842|GO:0016567
Alju11g1472 282 SUPERFAMILY TPR-like 14 133 IPR011990 GO:0005515
Alju11g1472 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 281 IPR013083 -
Alju11g1472 282 Pfam Anaphase-promoting complex, cyclosome, subunit 3 45 109 - -
Alju11g1472 282 ProSiteProfiles U-box domain profile. 204 278 IPR003613 GO:0004842|GO:0016567
Alju11g1472 282 SUPERFAMILY RING/U-box 197 279 - -
Alju11g1472 282 Gene3D Tetratricopeptide repeat domain 10 145 IPR011990 GO:0005515
Alju11g1472 282 CDD RING-Ubox_CHIP 205 275 IPR045202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1472 Alju-ChrAlju11 31975329 31980102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1472 15 281 U-box Gene Family AT3G07370 68.539 3.15e-138 389