Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1454 ATGGAGGACAACGAAGAGGTGGGTGAGGAGTATCTCTTCAAGGTTGTTCTAATTGGCGACTCTGCTGTTGGCAAGTCCAATTTGCTCTCTCGCTTTGCTCGCAACGAGTTTGATAGCAATTCTAAGGCTACAATTGGGGTTGAGTTTCAGACCCAAGTTGTGGAAATTGATGGCAAAGAAGTAAAGACTCAGATCTGGGACACTGCTGGCCAAGAGCGATTCAGGGCTGTCACTTCTGCTTACTATAGAGGTGCTGTTGGGGTTCTCATTGTTTACGATATCAGTCGGAGAACTACTTTTGATAGCATCAAGAGGTGGCTCGAGGAGCTTTCTCTTCATTGTGATACCACAGTGGCAAGAATGTTGGTGGGGAATAAGTGTGACCTTGAGAATATCAGAGAGGTTAGTGTAGAGGATGGCAAAAGCCTTGCAGAAGCAGAAGGCTTGTTCTTCATGGAGACATCTGCACTTGATTCTACCAATGTTCAAACAGCTTTCGAGATTGTTATCCGGGAAATCTACAACAACATCAGCCGAAAAGTGTTGAACTCCGATTCCTACAAGGCTGAACTATCCGTGAATCGAGTGAACCTGGCTAACGGTGCAGGATCAAAGCAAGGCCGGCTGAATTTTTCATGCTTTACAGCTAATACTACTCCATCTAAATCAGCTCAAGTTGAAGCTATTGGAGCCGAGGAAGGCAACGAGAACGATGGTGTTGCTGAAGTTTTGGACGAAGAGGAGCCTTTGGAGAAGCTTCTTGAGCCTTTTATGAAGGAACATCTATGTACTCTTGTCAAGAAAGCTGCAGAGAAGTACTCGGATTTTATCAATAATGTTCGTCATTTGGTGGACGTCGACCCTGACCACCAAAAAATCTTCATCCACGATCTTAAATGGGACACCACTGCTGATACCCTTATGAGTATTTTTTGGATGTATGGTGAGATTGAGGATTGCAAGGCTATCACCGATAGGGTCTCTGGGAAATCAAAAGGTTATGCCTTCATCAGAGTTCTGAAGGAGTCTGTGTATCTTGTCTCTCTCTTTTTTTTAATGGTCTAA 1065 0.4423 MEDNEEVGEEYLFKVVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVEIDGKEVKTQIWDTAGQERFRAVTSAYYRGAVGVLIVYDISRRTTFDSIKRWLEELSLHCDTTVARMLVGNKCDLENIREVSVEDGKSLAEAEGLFFMETSALDSTNVQTAFEIVIREIYNNISRKVLNSDSYKAELSVNRVNLANGAGSKQGRLNFSCFTANTTPSKSAQVEAIGAEEGNENDGVAEVLDEEEPLEKLLEPFMKEHLCTLVKKAAEKYSDFINNVRHLVDVDPDHQKIFIHDLKWDTTADTLMSIFWMYGEIEDCKAITDRVSGKSKGYAFIRVLKESVYLVSLFFLMV 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1454 354 PANTHER DRAB11-RELATED 9 186 - -
Alju11g1454 354 Gene3D - 288 338 IPR012677 -
Alju11g1454 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 183 IPR027417 -
Alju11g1454 354 SMART ras_sub_4 10 176 - -
Alju11g1454 354 ProSiteProfiles small GTPase Ras family profile. 6 308 IPR001806 GO:0003924|GO:0005525
Alju11g1454 354 Gene3D - 8 208 IPR027417 -
Alju11g1454 354 FunFam ras-related protein RABA5a 5 213 - -
Alju11g1454 354 Pfam Ras family 14 174 IPR001806 GO:0003924|GO:0005525
Alju11g1454 354 ProSiteProfiles small GTPase Rho family profile. 6 182 - -
Alju11g1454 354 SMART rho_sub_3 15 176 IPR001806 GO:0003924|GO:0005525
Alju11g1454 354 PRINTS Transforming protein P21 ras signature 54 76 - -
Alju11g1454 354 PRINTS Transforming protein P21 ras signature 116 129 - -
Alju11g1454 354 PRINTS Transforming protein P21 ras signature 151 173 - -
Alju11g1454 354 PRINTS Transforming protein P21 ras signature 36 52 - -
Alju11g1454 354 PRINTS Transforming protein P21 ras signature 13 34 - -
Alju11g1454 354 SMART rrm1_1 292 350 IPR000504 GO:0003723
Alju11g1454 354 SUPERFAMILY RNA-binding domain, RBD 286 338 IPR035979 GO:0003676
Alju11g1454 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 339 IPR000504 GO:0003723
Alju11g1454 354 CDD Rab11_like 10 174 - -
Alju11g1454 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 339 IPR000504 GO:0003723
Alju11g1454 354 SMART ran_sub_2 18 226 - -
Alju11g1454 354 ProSiteProfiles small GTPase Rab1 family profile. 8 213 - -
Alju11g1454 354 SMART rab_sub_5 13 176 - -
Alju11g1454 354 NCBIfam small GTP-binding protein domain 11 169 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1454 Alju-ChrAlju11 30527545 30534442 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1454 246 337 C2H2 Transcription Factor Family AT2G19380 38.043 1.61e-14 72.8