Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1413 ATGGTTCTGAGTAGCCGATTTTTCAGAGCTCATTTTGTTATTAGTGTCTTGCTGCTTCTTGTTATTAGCATCACCAATGGGTCTGATGCTGATATTTTCTGCTTGAAAAGCATAAAAAATTCACTTGAAGATCCTAATAATTATTTGAAGTCGTCCTGGAATTTCAACAATCAAACAGCAGGCTTTATCTGTCACTTTACTGGGGTTGAGTGTTGGCATGATGATGAGAACAGAGTCTTAAACCTCAAGCTGTCAAATATGGGACTCAAGGGTCAATTTCCTCGTGCCATACAAAATTGCTCAAGCTTAACTGGATTGGATCTTTCGATCAACATACTCTCTGGAACCATTCCAGCAGATATTAATAAACTTCTTGCCTTTGTGGTAACCCTGGACCTCTCATCAAATGACTTTTCAGGACAGATCCCTGTGGGCCTTGCAAATTGTTCCTATATTAATACCCTTAAACTTGATCAAAATCAATTAACTGGTCAAATTCCACCACAGCTTGCCCAGCTCGAACGGATTAAGACTTTTACGGTCACAAATAATCTCTTGACAGGGCCAGTTCCATCTTTTGTAGGCAAAGAGGGTATTACAGCAGATAGTTATTCAAATAATTCAGGACTTTGTGGGGCCTTCTTGGGGCCATGCGGGGCGAAGAAGGTTAACACTGCAGTTATAGCTGGTGCTGCTGTTGGTGGGGTAACTGTTGCAGCATTAGCATTGGGTGTTGTGGCATTCTTCTTTGTCCGCCGAGTCTCCGTGAAGAAGGAAGAGGATCCGGAAGGAAATAAATGGGCAAGAAGTTTAAAGGGAACAAAAGGAATTAAGGTTTCTATGTTTGAAAAATCAGTTTCAAAAATGAAATTGAGTGATCTCATGAAGGCAACTAACAACTTCAGTAAAAGCAATATCATTGGTTCGGGAAGAACAGGGACTATGTACAAAGCTGTCCTTGATGATGGCGGCACAATGTTCATGGTTAAAAGGTTGCAGGAATCTCAGCACTCGGAAAAGGAATTTGCATCTGAGATGGCTACATTGGGGACTGTTAGACACCGTAACTTGGTTTCCCTTTTAGGTTTTTGTGTGGCCAAACAGGAGAGGCTTTTGGTGTATAAATATATGGAAAATGGAAGCCTTCATGATCAGCTACATCCTGATACTGGTGGGAGCACCATGGAGTGGTCTTTAAGGCTAAAAATTGCAATTGGGGCAGCCAAAGGATTAGCATGGCTTCATCATAGCTGCAATCCTCGAATTATCCACCGAAACATAAGCTCCAAGTGCATCTTGTTAGATGCAGATTTTGAGCCAAAAATTTCTGATTTTGGCCTGGCTAGATTGATGAATCCAATTGACACACATTTGAGTACTTTTGTAAATGGTGAGTTTGGAGATCTTGGTTATGTTGCTCCTGAATATACAAGAACTCTGGTGGCTACGCCGAAGGGAGATGTCTATAGCTTCGGTACTGTGCTTCTAGAGTTGATGACAGGTGAGAGGCCTACCCATGTGGCAAAAGCTCCTGAAACTTTCAAAGGAAATCTGGTGGAGTGGATTTCGACACTATCGAGCAAACCTGAACTCCGGGATGCGGTTGATGAATCACTAGTTGGGAAGGGTGTTGATGTTGAGATTTTCCAGTTTCTCAAGGTTGCATGCAACTGTGTTTCACCAAATCCAAAGGAAAGGCCCACTATGTTTGAAGTGTACCAACTTCTTAGAGCAATTGGGAGCAGATACAATTTCACAGCTGATGATGAGATATTGGTACCTACAGATACTGGCGATGCTGCCAATTTCGAGGAACTTATTGTCGCACGAGAAGAAAATAGTTGA 1845 0.4201 MVLSSRFFRAHFVISVLLLLVISITNGSDADIFCLKSIKNSLEDPNNYLKSSWNFNNQTAGFICHFTGVECWHDDENRVLNLKLSNMGLKGQFPRAIQNCSSLTGLDLSINILSGTIPADINKLLAFVVTLDLSSNDFSGQIPVGLANCSYINTLKLDQNQLTGQIPPQLAQLERIKTFTVTNNLLTGPVPSFVGKEGITADSYSNNSGLCGAFLGPCGAKKVNTAVIAGAAVGGVTVAALALGVVAFFFVRRVSVKKEEDPEGNKWARSLKGTKGIKVSMFEKSVSKMKLSDLMKATNNFSKSNIIGSGRTGTMYKAVLDDGGTMFMVKRLQESQHSEKEFASEMATLGTVRHRNLVSLLGFCVAKQERLLVYKYMENGSLHDQLHPDTGGSTMEWSLRLKIAIGAAKGLAWLHHSCNPRIIHRNISSKCILLDADFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTRTLVATPKGDVYSFGTVLLELMTGERPTHVAKAPETFKGNLVEWISTLSSKPELRDAVDESLVGKGVDVEIFQFLKVACNCVSPNPKERPTMFEVYQLLRAIGSRYNFTADDEILVPTDTGDAANFEELIVAREENS 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1413 614 CDD STKc_IRAK 307 576 - -
Alju11g1413 614 Gene3D Phosphorylase Kinase; domain 1 262 376 - -
Alju11g1413 614 CDD TM_EGFR-like 225 259 - -
Alju11g1413 614 Pfam Leucine rich repeat N-terminal domain 29 72 IPR013210 -
Alju11g1413 614 SUPERFAMILY L domain-like 30 195 - -
Alju11g1413 614 Gene3D Ribonuclease Inhibitor 29 218 IPR032675 -
Alju11g1413 614 SUPERFAMILY Protein kinase-like (PK-like) 279 576 IPR011009 -
Alju11g1413 614 Gene3D Transferase(Phosphotransferase) domain 1 377 593 - -
Alju11g1413 614 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 262 376 - -
Alju11g1413 614 Pfam Protein kinase domain 302 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju11g1413 614 FunFam Nuclear pore complex protein NUP107 28 192 - -
Alju11g1413 614 ProSiteProfiles Protein kinase domain profile. 301 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju11g1413 614 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 48 194 - -
Alju11g1413 614 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 377 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1413 Alju-ChrAlju11 29537112 29539383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1413 16 590 Receptor kinase-like Gene Family AT3G28450 47.260 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Alju11g1413 Pkinase 1.9e-40 CL0016