LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju11g1407	ATGTCTTCCTTCTTCAGAGTCCTCGTTGGGGAATATACTGCTAAACTGCGAATCCCTCCCCTGTTTGTCTCCAGATTTTCTAGTCTTACACCAAAGACGGTAACGCTTTTTTGTTCTTCAGAAAGATCATGGATGGTTGATATTGAGGAAGAAGATAACAAACAATTGTCTTTCAAAAGAGGTTGGAACACATTTGTAGAAGATAATGCTTTAGAATTTGGGGATTTTATAGTTTTCAAATTCTATGGGAATTCAATATTCAAAGCTAAAATCTATGAAAAATCTTACCTGAGAAGAAAAACCTCAATGTCAGTATCTTCTTTCTTCAAGATCATCATCAATGAAGAATATACCACTAAACTGCGAATCCCTTTGTTGTTCGTCTCCAGATATTCTAGTCTAATCCCAAAAACAGTAACATTTATCAGGGCTTATTCTTCAGACAGATCATGGAAGGTTGATATTGTGGAAGAAGATGACAAAAGGTTATATTATAAAAATGGCTGGAGTACATTTGTAGAAGATAATGCTGTGGAGATTGCATATTTTTTAGTTATCAAATTTGTTGGGGATTCAACTTTTAAAGTTAAGATCTATGGAAAGTCTGCCTGTGAGAAGGAGCTTGAGAATGAGCCATGTGTCAACCAGTATTACTGCATACAGCATCATAATAAACAAATAACAACTCTGGATCGTCAAGTAAAGAGAGAAATAGATCCGATTGATGTAAGATATGTATCGATGGAGACGGTAGATCATGGGGATTCTAACCAAGAAATTGAGGCTCCCCAGAAAGAAGTTGAAACTCATGTCCCTATCAAGAAAACTGCAGGCAACAGGTATGAGTCGATTGAATGCCCCAATTTGGACTCTAAGAAGAATCCTTCATTCAAAATTCTTCTGCAACATGCCTATGCAGAGAAGGGTGTCATGTGCTTTCCAACAGAGTTTTTTCATAAGCATATGAAGAATAAGAGACAAGAGGTAGAGATGGAGACCTTGGAAGGAGTATGGACTGTGACATTACTCCCTCACATGAAAAGGACAAGGACATTCGCCAGATTAAGCAAAGGCTGGTCGGAATTCGCAAAAGCCAACCGTTTCAAAACCGGAGAGACACTTGTTTTCGAACTGACTCGAAAAGGTGATTGTCCCAAGTTTGTCGTCAATAGGCAATGA	1179	0.38	MSSFFRVLVGEYTAKLRIPPLFVSRFSSLTPKTVTLFCSSERSWMVDIEEEDNKQLSFKRGWNTFVEDNALEFGDFIVFKFYGNSIFKAKIYEKSYLRRKTSMSVSSFFKIIINEEYTTKLRIPLLFVSRYSSLIPKTVTFIRAYSSDRSWKVDIVEEDDKRLYYKNGWSTFVEDNAVEIAYFLVIKFVGDSTFKVKIYGKSACEKELENEPCVNQYYCIQHHNKQITTLDRQVKREIDPIDVRYVSMETVDHGDSNQEIEAPQKEVETHVPIKKTAGNRYESIECPNLDSKKNPSFKILLQHAYAEKGVMCFPTEFFHKHMKNKRQEVEMETLEGVWTVTLLPHMKRTRTFARLSKGWSEFAKANRFKTGETLVFELTRKGDCPKFVVNRQ	392

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju11g1407	392	SUPERFAMILY	DNA-binding pseudobarrel domain	3	95	IPR015300	-
	Alju11g1407	392	CDD	B3_DNA	107	199	IPR003340	GO:0003677
	Alju11g1407	392	PANTHER	B3 DOMAIN-CONTAINING	3	99	-	-
	Alju11g1407	392	ProSiteProfiles	B3 DNA-binding domain profile.	106	202	IPR003340	GO:0003677
	Alju11g1407	392	Gene3D	-	274	391	IPR015300	-
	Alju11g1407	392	ProSiteProfiles	B3 DNA-binding domain profile.	296	392	IPR003340	GO:0003677
	Alju11g1407	392	SUPERFAMILY	DNA-binding pseudobarrel domain	292	389	IPR015300	-
	Alju11g1407	392	Pfam	B3 DNA binding domain	297	388	IPR003340	GO:0003677
	Alju11g1407	392	Pfam	B3 DNA binding domain	13	91	IPR003340	GO:0003677
	Alju11g1407	392	Pfam	B3 DNA binding domain	108	200	IPR003340	GO:0003677
	Alju11g1407	392	SMART	B3_2	108	202	IPR003340	GO:0003677
	Alju11g1407	392	SMART	B3_2	296	391	IPR003340	GO:0003677
	Alju11g1407	392	SMART	B3_2	4	95	IPR003340	GO:0003677
	Alju11g1407	392	CDD	B3_DNA	3	92	IPR003340	GO:0003677
	Alju11g1407	392	CDD	B3_DNA	297	391	IPR003340	GO:0003677
	Alju11g1407	392	SUPERFAMILY	DNA-binding pseudobarrel domain	103	204	IPR015300	-
	Alju11g1407	392	Gene3D	-	100	204	IPR015300	-
	Alju11g1407	392	Gene3D	-	1	96	IPR015300	-
	Alju11g1407	392	ProSiteProfiles	B3 DNA-binding domain profile.	1	95	IPR003340	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju11g1407	Alju-ChrAlju11	29400862	29404068	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju11g1407	108	208	B3 DNA Binding Superfamily	AT5G66980	29.808	3.37e-10	58.9

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Alju11g1407		B3	1.1e-12	CL0405