Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1406 ATGTGTTTGCGTTCTCTGTTCTCGGCGTCTGTAGTCACCGTCGTCGGCTCCAAATCGACTCCGGAAGCCCCCTCAACCTCTTTCCCTCTTTTTCAGTTTCAGCGGATCCCTCCCCTGTTTGTCTCCAGATTTTCTAGTCTGACCCCAAAAACAGTAAAACTAATATGTTCTTTAAAAGGGTCATGGATGATTGATATTGAGCAAGAAGATAATAAAGAATTGTATTTCACAAGAGGTTGGAATACATTTGTAGAAGATAATGCTTTAGAAACTGGGCCGTTTATAGTTTTCAAATTCGACGGGGATTCAACATTTAAAGCTACAATCTTTGGAAACTCTGCCTGCGAGAAGGAGCTTGAGAATCAGCCATGTATCAATCCGAATTACTGCTTAACACAGCATCGTAATAAACGAGCAAGAACTCCAGAAGAAAGTAATCCAACTGAAGTTGAAGAAACTGAGGCTTCCCAGAATGAAGTCGAAGAAAAAGGCTTTGAATCTGATGGCCCTATCAAGAAAACTGCAGGCAACAGTTATGGGTCTCGTGAAGGCCCCGATTCGGACTGTGAGAGGAATCCTTCATTCAAAATTATTATGAAACGAACCTATGCACAAAAGGGTGTCATGATTAATGAGTATGAGGAACTTGTGCAGAACCTCCCAACAGAGTTCTTCCTGAAGCATATAAAAAATGAGAGACAAGAGGTAGAGATTGAGACAGGGGAAATGGACTGTGACCCTACTCACCCAAAAGAAAAGGGAAAGGACATTTGCCAGATTAAGCAAAGGTTGGTCGGATTTCGCCAAAGTGAACCGTCTCGAACCTGGGGAGACTCTCGTTTTTCAAATGGTTCGGAAAGGAGATCATCCCAAGTTCATTGTCCATAG 888 0.4257 MCLRSLFSASVVTVVGSKSTPEAPSTSFPLFQFQRIPPLFVSRFSSLTPKTVKLICSLKGSWMIDIEQEDNKELYFTRGWNTFVEDNALETGPFIVFKFDGDSTFKATIFGNSACEKELENQPCINPNYCLTQHRNKRARTPEESNPTEVEETEASQNEVEEKGFESDGPIKKTAGNSYGSREGPDSDCERNPSFKIIMKRTYAQKGVMINEYEELVQNLPTEFFLKHIKNERQEVEIETGEMDCDPTHPKEKGKDICQIKQRLVGFRQSEPSRTWGDSRFSNGSERRSSQVHCP 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1406 295 SUPERFAMILY DNA-binding pseudobarrel domain 32 115 IPR015300 -
Alju11g1406 295 CDD B3_DNA 35 110 IPR003340 GO:0003677
Alju11g1406 295 SMART B3_2 30 113 IPR003340 GO:0003677
Alju11g1406 295 Gene3D - 24 115 IPR015300 -
Alju11g1406 295 Pfam B3 DNA binding domain 35 108 IPR003340 GO:0003677
Alju11g1406 295 ProSiteProfiles B3 DNA-binding domain profile. 36 113 IPR003340 GO:0003677
Alju11g1406 295 MobiDBLite consensus disorder prediction 269 295 - -
Alju11g1406 295 PANTHER B3 DOMAIN-CONTAINING 27 226 - -
Alju11g1406 295 MobiDBLite consensus disorder prediction 136 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1406 Alju-ChrAlju11 29393603 29395633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1406 36 119 B3 DNA Binding Superfamily AT5G66980 39.080 1.85e-16 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju11g1406 B3 2.1e-10 CL0405