Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1405 ATGGATCAGTGCCATCGGGAAGGAAGCAACACGGGCTTCAAGAATAATCCTTCATTCGCAGTACATCTCCAGAATGCCTACTCAAATAAGGGTTGCATGTGCATTCCAACGGAGTTCTTCAACAAGCACATGGAAAAGAAGAGGCAAGAGGTGGAGATTGAGACAGTGAAAGGAGCATGGAAAGTGACATTACTTCCCCACAAGAAAGGAACAAGAACGTTTGCAAGGTTCAGCAAGGGTTGGTCACAATTTGCTCGCAACAATCACTTCAAGACCCGACAGACTCTCTTTTTCAAAATGGTTCGCACTTGTCATCGTCCCACGTTTGTTGTTCATGATCATGAGCAAGAAAATGCCTCTTCATCATGA 369 0.4472 MDQCHREGSNTGFKNNPSFAVHLQNAYSNKGCMCIPTEFFNKHMEKKRQEVEIETVKGAWKVTLLPHKKGTRTFARFSKGWSQFARNNHFKTRQTLFFKMVRTCHRPTFVVHDHEQENASSS 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1405 122 Pfam B3 DNA binding domain 22 113 IPR003340 GO:0003677
Alju11g1405 122 Gene3D - 5 116 IPR015300 -
Alju11g1405 122 CDD B3_DNA 17 113 IPR003340 GO:0003677
Alju11g1405 122 SMART B3_2 19 115 IPR003340 GO:0003677
Alju11g1405 122 SUPERFAMILY DNA-binding pseudobarrel domain 15 112 IPR015300 -
Alju11g1405 122 ProSiteProfiles B3 DNA-binding domain profile. 18 115 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1405 Alju-ChrAlju11 29358460 29361064 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1405 16 103 REM Transcription Factor Family AT1G49480 30.337 2.23e-07 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju11g1405 B3 2.6e-12 CL0405