Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1403 ATGCAGCCAATCCCAAAGCTGTTTGTCTCTAGCTTCAGTCTTACACCAAAGACAGTAATATTCATCAATGCTTCAAAAAAGCTATGGATGGTTGATATGGAAAAAGAAGAAGAAGATCCCAAAGAATTGTACTTCAAAAAGAATTGGCCTAAATTTGTGAAAGACAACGCTATAGAGGCTGCAGACTTCCTGATTTTCAAGTTTGATGGGAATTCAACATTCGAAGTTGTTATCTGTGGAAAATCTGCCTGCGATAAGATGCTTGAGAGCCAGGCAAAGGCACATATGAATCAGAAAAACCACAAACACAGCCATAATAGACTGGAAGCATCAACTCTAGATCATCGAGAAAATTGGAAAGGAAAAGATGTGATTGATCGTGAGATAAAGGAGGAGAGAGAAGATTTTGATGATTTTGGAACTTACAGCCAAGAAATGTGGGATGAAACTTGGTCGTCTGAGTCTCATGAAGATGAAGAAGATGATGATGAAGAATATGAAGAGAGTGACAAGTCTGATGATATTGGGGAAGGAAGCAACTTGGGCTCCATGCCTCCTTCTTTCACAGTACAAATACTTGCCTCAGCAAAAAGGGGTTGCATGTGTGTTCCAACAAAGTTCTTCAAGAAGTACCTGAGAAATGAGAAACAGGAAGTGGAGATTGAGACAGTGAAAGGAGTCTGGAAAGTGACATTACTTCCCCACAAGAAAAGAACAAGAACGTTTGCTAGGTTCAGTAGGGGTTGGTCGGCATTCGCTCGAAGGCATCGGCTTGAGGTCGGAGATGCTCTGCTTTTTCAGATGATTCGGAGAGGTAAGTGTCCCAAGTTCATTGTTCAAAGGCAAAGAGAAGTCTCAGGATGA 864 0.4132 MQPIPKLFVSSFSLTPKTVIFINASKKLWMVDMEKEEEDPKELYFKKNWPKFVKDNAIEAADFLIFKFDGNSTFEVVICGKSACDKMLESQAKAHMNQKNHKHSHNRLEASTLDHRENWKGKDVIDREIKEEREDFDDFGTYSQEMWDETWSSESHEDEEDDDEEYEESDKSDDIGEGSNLGSMPPSFTVQILASAKRGCMCVPTKFFKKYLRNEKQEVEIETVKGVWKVTLLPHKKRTRTFARFSRGWSAFARRHRLEVGDALLFQMIRRGKCPKFIVQRQREVSG 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1403 287 ProSiteProfiles B3 DNA-binding domain profile. 186 283 IPR003340 GO:0003677
Alju11g1403 287 MobiDBLite consensus disorder prediction 152 172 - -
Alju11g1403 287 Pfam B3 DNA binding domain 196 279 IPR003340 GO:0003677
Alju11g1403 287 Pfam B3 DNA binding domain 4 79 IPR003340 GO:0003677
Alju11g1403 287 PANTHER B3 DOMAIN-CONTAINING 3 271 - -
Alju11g1403 287 MobiDBLite consensus disorder prediction 94 113 - -
Alju11g1403 287 Gene3D - 1 84 IPR015300 -
Alju11g1403 287 CDD B3_DNA 4 79 IPR003340 GO:0003677
Alju11g1403 287 CDD B3_DNA 186 279 IPR003340 GO:0003677
Alju11g1403 287 SUPERFAMILY DNA-binding pseudobarrel domain 183 272 IPR015300 -
Alju11g1403 287 MobiDBLite consensus disorder prediction 149 184 - -
Alju11g1403 287 SUPERFAMILY DNA-binding pseudobarrel domain 4 87 IPR015300 -
Alju11g1403 287 ProSiteProfiles B3 DNA-binding domain profile. 1 82 IPR003340 GO:0003677
Alju11g1403 287 Gene3D - 167 284 IPR015300 -
Alju11g1403 287 SMART B3_2 1 82 IPR003340 GO:0003677
Alju11g1403 287 SMART B3_2 188 283 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1403 Alju-ChrAlju11 29343536 29344814 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1403 16 84 B3 DNA Binding Superfamily AT3G06160 39.130 1.36e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju11g1403 B3 9.2e-12 CL0405