Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1402 ATGTCTCGTTATTTCTTCAAAGTCCTCATCGGAGAATGGAAGACTAAACTGCGAATCCCTCAGCTGTTTGTTTCCAGCTTCAGTCTGACACCTAAGACAGTAATACTCATCAATGCTTCTTCAAAAAATCTATGGAAGGTCGATATGGAGCAAGTAGAAGAAGATCCCACAGAATTGTACTTCAAAAAGGGTTGGTCTAAATTTGTAAAAGACAACGCTTTAATGGCGGCAGATTTCCTCATTTTCAAGTTTGATGGGAATTCAACTTTCAAAGTTGTTATCTGTGGCAAATCTGCCTGCGAAAAAATGCTTGAGAGCCAGGCAAGAACACAAATGAATCAGGAAAAAACCCACAAACAAAGTCATAATAATAATAAAAAGAGAGCATCATCAACTCGAGATCGTGGAGAGAATCGAAAAGGAAAAGATTCGATTCTTGTTGAGATAAAGGAGAAATTAGATTCTTTTGATTCTGGAACTTCTAGCCAAGAAACATGGGATGAAACGTGGGATGAGAAAGAAGAAGAAGAAGATGATGATGATGATGATGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGTGACAAGTTTGGTGATATTAATTCTGAACCTCATGATACTACCATGAATATTGGGGAAGGAAGCAGCTTGGCCATGATTCCTTCATTCAGAATAAAGCTCCAGCTTGCCTCCGCAAAAAGAGGTGTCATGTGCATTCCAACAGACTTCTTCAAGAAGTACATGAGAAAGAAGAAACAGGAGGTGGAGATGGAGACAGTGAAAGGAGTATGGAAAGTGACATCACTTCCCCACCAGAAAAGAGGTCAAATGTTTGCAAGGTTCAGCAGGGGTTGGTCGGAATTCGCCCGGAAGAATCGGTTTCAGGCCGGAGAGACTCTTCTTTTTAGCATGATTCAGAGAGGTCATCGTCCCAAGTTCATTGTTCGTAAGGAATAA 963 0.4019 MSRYFFKVLIGEWKTKLRIPQLFVSSFSLTPKTVILINASSKNLWKVDMEQVEEDPTELYFKKGWSKFVKDNALMAADFLIFKFDGNSTFKVVICGKSACEKMLESQARTQMNQEKTHKQSHNNNKKRASSTRDRGENRKGKDSILVEIKEKLDSFDSGTSSQETWDETWDEKEEEEDDDDDDDEEEEEEEEEEESDKFGDINSEPHDTTMNIGEGSSLAMIPSFRIKLQLASAKRGVMCIPTDFFKKYMRKKKQEVEMETVKGVWKVTSLPHQKRGQMFARFSRGWSEFARKNRFQAGETLLFSMIQRGHRPKFIVRKE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1402 320 SUPERFAMILY DNA-binding pseudobarrel domain 223 318 IPR015300 -
Alju11g1402 320 CDD B3_DNA 3 95 IPR003340 GO:0003677
Alju11g1402 320 PANTHER B3 DOMAIN-CONTAINING 3 309 - -
Alju11g1402 320 MobiDBLite consensus disorder prediction 127 157 - -
Alju11g1402 320 Gene3D - 1 100 IPR015300 -
Alju11g1402 320 Pfam B3 DNA binding domain 5 96 IPR003340 GO:0003677
Alju11g1402 320 Pfam B3 DNA binding domain 230 317 IPR003340 GO:0003677
Alju11g1402 320 Gene3D - 186 319 IPR015300 -
Alju11g1402 320 ProSiteProfiles B3 DNA-binding domain profile. 2 98 IPR003340 GO:0003677
Alju11g1402 320 MobiDBLite consensus disorder prediction 107 212 - -
Alju11g1402 320 MobiDBLite consensus disorder prediction 168 199 - -
Alju11g1402 320 SUPERFAMILY DNA-binding pseudobarrel domain 3 100 IPR015300 -
Alju11g1402 320 SMART B3_2 225 320 IPR003340 GO:0003677
Alju11g1402 320 SMART B3_2 5 98 IPR003340 GO:0003677
Alju11g1402 320 ProSiteProfiles B3 DNA-binding domain profile. 224 320 IPR003340 GO:0003677
Alju11g1402 320 CDD B3_DNA 239 319 IPR003340 GO:0003677
Alju11g1402 320 Coils Coil 173 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1402 Alju-ChrAlju11 29334472 29336845 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1402 1 308 B3 DNA Binding Superfamily AT3G18990 22.222 1.26e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju11g1402 B3 3.2e-10 CL0405