Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1389 ATGTTAATGCAGAGTTCTCTTCCTAGTTCAATTGAAGCTGCTCTATTTCATGTATCTGATAAAGGGAAGGAAGATGCTCTATGTGACTGGATGCCTAGTGCTGAAACTTGGCAGGTGTGCCTGAAATGCAAAAAATACCCTCTTTACTGCTGCAGAAAAGTTGAAGCAATGCATGAACAAGAGGATAGAAGGAATGATGATGTTCCATGCTACAGAAAAGTTGAAGCAGAGCAAGAGGATAGAAGGAATGATGAGGGTCCATTCTGCAGAGAAGTTGAAGCAATGCAAGAGCATGGGGATAGAAGGAATGATGATGTTCCGTGCTGCAGAAAAGTTGAAGCAATGCAACAGGTAGAGGATAGAAAGAATGAAGATGTTCCATGCAGCTCAAACTGCATAAGCAGCTTAGGTCGACCATCAACTGCCAGTTCAATGACTGGAAATACTGTGCCTAATCTAGTTTACAAGAGAAAGAAACTATGGAAGAGTTCAACCTCACCCCTTTTAAAAATAGGACCTATGTCTGTACCAGTAAGTGCCAATTGCCCTTCATTTATAAGCCTCTGTGCTAATAGATCATCATTGGAGCATCAGCCAACCAGCTCTCAAGTTGAGCAAGATATTGAAATGGTTAAGGACCCTGTTGCACCCATTGTCTTATGCGAAACAGCAATAGATAACTGCAGACCTAAACATTTAGGTATTGACAGCATTAATGATAGTTGCTCCACATCAAAATCAATTATGGAAATTGTTTCAGATTCCAAAGAAATTGGAGTGGATGACACTGGCGAATGCTCCTCTTCTAGTGTATTAGTCATGGATGGCCCTAGAGAAGACCTATCAGCAAGGGATCTCTGCATCAAAGTTCTAAGAAGCCATGGACTCCTTGGAGGGGGTTCTTATGCTGATATTGTAGCTTCTCAAGATCAGGCTGCTGCCTCTGGTGATAGTTTCAGTTCCCGGTCATGCAAAATATGTGGCAATTTAGATGGCTCATTGAACATGCTTATATGTGATCATTGTGAAGAGGCATACCATCCATCCTGCATCGTTCCACGTATGAAGAATTTACCAATTGATGAATGGTTTTGTCATTCATGTATAAAAAAGAAGCAAAAAATTCTTAAGGAGAAGATTATTAAAAGTTCACCAACTATCAACAGTGAAATGGAATTACGCAGATCTTCCTCAGTTAATGGAGGATTGAATCCTATACTGTTGATGTTGAATGATTCTGGGCCAAGTACAACTGGTGTACGGGTTGGTAAAGGTTTTCAAGCAGAAGTTCCTGGATGGTCAGGTCCAATAGGAAGTGATGATGCTTGTGCTGAACTGTTGGAAATTGGTTCTTCAGAATTTTCCAGTTTTCAGGAAAAGAATCTCAAAAGGTCAACTAGACTTAGCCCCATTTGTAATTGGCTTCAGTGTCAGGAGGTTGTAGATAGAGCCAAAGGAACCATATGTGGGAAATGGCGCAGGGCTCCTATTTTTGAAGTCCAAACTGATAAATGGGAGTGCTTCTGTGCCATCCATTGGGATCCAGCTCATGCTGATTGTGCGTCACCTCAGGAGTTGGAAACAGATCAAATTCTGAAGCAACTGAAGCATGTAGAATTGTTGAGTACACGACTAACCGCGAAACGTTCAAAATTCGCCGGCAAAAAGGGTGGCCAATGA 1680 0.4155 MLMQSSLPSSIEAALFHVSDKGKEDALCDWMPSAETWQVCLKCKKYPLYCCRKVEAMHEQEDRRNDDVPCYRKVEAEQEDRRNDEGPFCREVEAMQEHGDRRNDDVPCCRKVEAMQQVEDRKNEDVPCSSNCISSLGRPSTASSMTGNTVPNLVYKRKKLWKSSTSPLLKIGPMSVPVSANCPSFISLCANRSSLEHQPTSSQVEQDIEMVKDPVAPIVLCETAIDNCRPKHLGIDSINDSCSTSKSIMEIVSDSKEIGVDDTGECSSSSVLVMDGPREDLSARDLCIKVLRSHGLLGGGSYADIVASQDQAAASGDSFSSRSCKICGNLDGSLNMLICDHCEEAYHPSCIVPRMKNLPIDEWFCHSCIKKKQKILKEKIIKSSPTINSEMELRRSSSVNGGLNPILLMLNDSGPSTTGVRVGKGFQAEVPGWSGPIGSDDACAELLEIGSSEFSSFQEKNLKRSTRLSPICNWLQCQEVVDRAKGTICGKWRRAPIFEVQTDKWECFCAIHWDPAHADCASPQELETDQILKQLKHVELLSTRLTAKRSKFAGKKGGQ 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1389 559 ProSiteProfiles Zinc finger PHD-type profile. 321 371 IPR019787 -
Alju11g1389 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 382 IPR013083 -
Alju11g1389 559 PANTHER TRANSCRIPTION INTERMEDIARY FACTOR 245 468 - -
Alju11g1389 559 SUPERFAMILY FYVE/PHD zinc finger 316 375 IPR011011 -
Alju11g1389 559 Gene3D - 472 537 - -
Alju11g1389 559 SMART PHD_3 323 369 IPR001965 -
Alju11g1389 559 Pfam PHD-finger 324 370 IPR019787 -
Alju11g1389 559 ProSiteProfiles Zinc finger CW-type profile. 468 528 IPR011124 GO:0008270
Alju11g1389 559 ProSitePatterns Zinc finger PHD-type signature. 324 368 IPR019786 -
Alju11g1389 559 FunFam uncharacterized protein LOC106759733 isoform X4 472 537 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1389 324 397 C2H2 Transcription Factor Family AT3G01460 32.051 5.43e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju11g1389 PHD 5.9e-10 CL0390