Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1384 ATGCCATCAAACAATCAAACAAGTTCTAAATATCTTCATAGAGATCAGTTGCTGCCGCTGTGTTCCTCACTCCTATCTCTTGTGGGAGCAGATCGCGGCTCAATGGCTTTCGTCAAGGCTCAGAAAACAAAGGCCTACTTCAAGAGGTATCAAGTTAAGTTTAAGAGAAGAAGAGAGGGTAAAACTGACTACAGAGCCAGGATTCGGTTGATTAACCAGGATAAGAACAAGTATAACACCCCAAAGTACCGATTTGTGGTTCGATTTACAAACAAGGATATCATTGCTCAGATAACATCTGCTAGCATTGCTGGCGATATTGTTCTTGCTGGAGCTTACGCACATGAGCTGCCACGCTATGGCCTTGAAGTAGGTCTCACAAACTATGCTGCAGCTTACTGCACTGGACTGCTCTTGGCCCGTCGTGTCCTTAAGACGCTTGAAATGGAGGAGGAGTATGAGGGCAATGTTGAGGCAACTGGGGAGGACTATTCTGTTGAACCTGCTGAAACCAGGAGGCCCTTCCGTGCTCTCCTTGATGTTGGTCTTATAAGGACTACCACGGGCAACCGGGTATTTGGTGCCCTTAAGGGAGCACTGGATGGGGGTCTGGATATTCCTCACAGTGATAAAAGGTTTGCTGGTTTCAACAAAGACAAGAAGGAGCTTGATGCTGATGTTCACCGTAGATACATCTTTGGTGGCCATGTTGCTGCCTATATGAAGACGCTGATGGAAGATGAACCCGAGAAATACCAGTCACATTTCTGTGAATATATCAAGCGAGGATTAGAGCCTGATGGTCTTGAGGAGATGTACAAGAAGGTCCATGCTGCTATTCGTGCAGACCCAACAGTGAAGAAATCAGAGAATGAACCGCCCAAGGAACACAGGAGGTTCAACTTGAAAAAGCTGACCTATGAAGAGAGGAAGGCTAGGTTGGTTGCAAGGTTGCAGGCACTAAACTCAGCTGCTGGTGCTGATGATGATGACGATGATGAGGAAGACGATGAGTGA 1017 0.4661 MPSNNQTSSKYLHRDQLLPLCSSLLSLVGADRGSMAFVKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQITSASIAGDIVLAGAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKTLEMEEEYEGNVEATGEDYSVEPAETRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFNKDKKELDADVHRRYIFGGHVAAYMKTLMEDEPEKYQSHFCEYIKRGLEPDGLEEMYKKVHAAIRADPTVKKSENEPPKEHRRFNLKKLTYEERKARLVARLQALNSAAGADDDDDDEEDDE 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1384 338 PRINTS Ribosomal protein L5 signature 54 73 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Alju11g1384 338 PRINTS Ribosomal protein L5 signature 77 96 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Alju11g1384 338 PRINTS Ribosomal protein L5 signature 178 197 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Alju11g1384 338 PRINTS Ribosomal protein L5 signature 240 260 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Alju11g1384 338 PRINTS Ribosomal protein L5 signature 118 138 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Alju11g1384 338 PRINTS Ribosomal protein L5 signature 198 217 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Alju11g1384 338 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 48 209 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Alju11g1384 338 CDD Ribosomal_L18_L5e 75 204 - -
Alju11g1384 338 SUPERFAMILY Translational machinery components 45 286 - -
Alju11g1384 338 Gene3D - 35 325 - -
Alju11g1384 338 PANTHER RIBOSOMAL PROTEIN L5-RELATED 35 324 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Alju11g1384 338 Hamap 50S ribosomal protein L18 [rplR]. 48 280 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Alju11g1384 338 MobiDBLite consensus disorder prediction 284 303 - -
Alju11g1384 338 Pfam Ribosomal L18 C-terminal region 269 322 IPR025607 -
Alju11g1384 338 FunFam 60S ribosomal protein L5 35 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1384 Alju-ChrAlju11 28165200 28168101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1384 35 326 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 79.795 5.13e-179 496