Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1376 ATGCTGCTGGGGCAAGCTTCTCCTGTTAGCTTCAGAACCAAACCCAATTGCTTCGAAATGCAGATTCAAAGCCATGCGCGTCTCTTCTCCTTTGCTCAGACTTGTTTCTGTGACACCTCATGTACGAACGTGCTACGCAGAAGTGTTGGAAATGCATTGGTCGTTAGAGCTGGGCACTCTTCCGCACCCAAAGACGTTGTTTCTTGGAACCCTAACACCGCCAACAATGGGTTGAGCTCGAATGTAGAGAATTTACCAGATATAACAATTGTTACTGAAGGCTTTGAGAGTGACTCAGTTATTACATATAGTGACTCTACAATAAAATCTAAGGGGAGGTTATCTGGAAGTTTTGGCAAACTGAAAGCACAGAAAGTCAAGGCCATCATCCACAGAACTATTCAGAAGAAGCAGGAAAGAAGCATTAATGATGATAACCTAGCTGTAGAACATCCAGAATTAGGAATAGAAGACGATTGGGAACAATCTGAGGGATCTAATTCTCACATAGGATATCAGAACACACCCAATAAATCTCAAAACAATGACAACAGAATAGAGAGTTCAGATAAATTAGTTGAAAGGCATTCTGCCCCTCGTTCAAAAGGAGGTAGAGAATCTTCACGTACTTTTAAGACTGAATCACAAAAAATGTTAAAGGAACAGAGAAAACCATTGTCTGACAGTGACTTTTTCAGTCGAAAGTCCTTCAAAGATCTAGGCTATAGAGAATATATGATTGAATCTCTGGCAAAGCAATTTTACCGGCGGCCTTCACATATACAGGCCATGGCATTTGAACCAGTATATACTGGAAAGAGTTGTATAATAGCTGATCAAAGTGGTTCTGGAAAGACTCTAGCATATCTTGCACCAATTATTCAGAAGCTTAGACAAGAAGAATTGGAAGGAATTGCCAATTCCTCATCACAAGCTCCTCGAGTGGTCATATTGGCACCAACTGCTGAGTTAGCTTCTCAGGTGTTAGCTAATTGTCGATCAATGTCAAAATCTGGGGTTCCATTCAAATCTTTAGTTGTAACAGGTGGCTTTCGACAGAGAACTCAACTGGAGAATTTAGAGCAGGGTGTTGATGTTTTAATAGCAACACCTGGCCGTTTTATGTTCCTGGTCAAGGAAGGCTTCTTGCAGTTAACAAATTTAACATGTGCGGTGTTGGATGAGGTAGATATACTTTTTGGTGATGACGATTTTGAAGTGTCGCTTCAGTGCTTGATTAATTCTTCTCCCGTTGCCACACAATATTTATTTGTGACTGCAACTTTACCAAAAGATATTTACAACAAACTAGTTGAAGTTTTTCCTGATTGTGAAGTGATCATGGGACCTGGTATGCACCGGATAAGCTCTCGACTTGAGGAGGTGCTAGTTGATTGCAGTGGAGCTGATGGGGAAGAAAAATCCCCGGATACTGCATTTCTTAATAAGAAGACAGCTCTTCTACAAATTGCAGAAGGAAGTCCTGTCCCAAAAACCATTGTCTTCTGCAACAAAATTGAAACCTGCAGAAAAGTTGAGAATGCATTAAAGCGTTTTGATAGGAAAGAGACTCGTGTACAAGTTCTACCTTTCCATGCTGCCATGACACAGGAATTACGGCTTGCTAATATGGAAAAGTTTACACGTTCTCAATCAAAAGAAGTCTCCCAGTTTCTGGTTTGCACAGACAGAGCATCGCGGGGGATTGACTTTACTGGAGTGGATCATGTTATACTTTTCGACTTCCCACGTGATCCAAGCGAATATGTCCGCCGTGTTGGAAGAACTGCAAGAGGTGCTGCTGGAAAGGGCAAGGCATATATATTTGTGGTTGGCAAGCAAGTATCACTTGCGCGTAAAATCATGGATAGAAATAGGAAGGGTCATCCTCTACATGATGTGCCTTCAGCCTATGAGTTCATGAACAATGAAACGCCCAGCGCATCGGCATTTTGTTTCCGTCACCGGTACGGAGAGTCAAATTGTCGGAACCCCGATTCGATCGGAGCATTATTCACTTCACTTTCTGCTTTGTTTTTACTGATAGTCTCTTCTATAAAATTTCATTGA 2070 0.4159 MLLGQASPVSFRTKPNCFEMQIQSHARLFSFAQTCFCDTSCTNVLRRSVGNALVVRAGHSSAPKDVVSWNPNTANNGLSSNVENLPDITIVTEGFESDSVITYSDSTIKSKGRLSGSFGKLKAQKVKAIIHRTIQKKQERSINDDNLAVEHPELGIEDDWEQSEGSNSHIGYQNTPNKSQNNDNRIESSDKLVERHSAPRSKGGRESSRTFKTESQKMLKEQRKPLSDSDFFSRKSFKDLGYREYMIESLAKQFYRRPSHIQAMAFEPVYTGKSCIIADQSGSGKTLAYLAPIIQKLRQEELEGIANSSSQAPRVVILAPTAELASQVLANCRSMSKSGVPFKSLVVTGGFRQRTQLENLEQGVDVLIATPGRFMFLVKEGFLQLTNLTCAVLDEVDILFGDDDFEVSLQCLINSSPVATQYLFVTATLPKDIYNKLVEVFPDCEVIMGPGMHRISSRLEEVLVDCSGADGEEKSPDTAFLNKKTALLQIAEGSPVPKTIVFCNKIETCRKVENALKRFDRKETRVQVLPFHAAMTQELRLANMEKFTRSQSKEVSQFLVCTDRASRGIDFTGVDHVILFDFPRDPSEYVRRVGRTARGAAGKGKAYIFVVGKQVSLARKIMDRNRKGHPLHDVPSAYEFMNNETPSASAFCFRHRYGESNCRNPDSIGALFTSLSALFLLIVSSIKFH 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1376 689 CDD DEADc 246 435 - -
Alju11g1376 689 SMART ultradead3 254 462 IPR014001 -
Alju11g1376 689 MobiDBLite consensus disorder prediction 184 226 - -
Alju11g1376 689 Gene3D - 187 447 IPR027417 -
Alju11g1376 689 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 482 642 IPR001650 -
Alju11g1376 689 MobiDBLite consensus disorder prediction 165 183 - -
Alju11g1376 689 MobiDBLite consensus disorder prediction 159 226 - -
Alju11g1376 689 Gene3D - 474 649 IPR027417 -
Alju11g1376 689 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 167 639 - -
Alju11g1376 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 269 611 IPR027417 -
Alju11g1376 689 Pfam Helicase conserved C-terminal domain 486 599 IPR001650 -
Alju11g1376 689 CDD SF2_C_DEAD 483 610 - -
Alju11g1376 689 Pfam DEAD/DEAH box helicase 260 433 IPR011545 GO:0003676|GO:0005524
Alju11g1376 689 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 266 447 IPR014001 -
Alju11g1376 689 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 235 263 IPR014014 GO:0003724
Alju11g1376 689 SMART helicmild6 510 600 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1376 Alju-ChrAlju11 27941473 27953059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1376 236 621 Eukaryotic Initiation Factors Gene Family AT3G19760 27.202 1.14e-28 117