Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1361 ATGTTTTTTATTCTCTGCAACCGGCGAAACTGTTTGTGTCTAGGGTTTTCCTCTCTTGCCCCGGGTTTCAATTCAAACAGCCGCTGTTGCCGACGTCACTCCGTCACACACAGCGTCATGAAGCTCATCGTGAAGACCTTGAAAGGAAGCCATTTTGAAATCAAAGTTCAACTTTCAGACACTGTCATGGCTGTCAAGAAGAATATAGAAGATGTACAAGGAAAAGATAATTACCCATGTGGACAGCAATTGCTTATTTTTAATGGCAAGGTTTTGAAAGATGAAACTACGATGGGAGAGAATCAGGTATCTGAAGAAGGATTTCTTGTTGTCATGCTTAGCAAGAGTAAAACTTCAAGTTCAGCTGGGGCTTCATCTGTTCAGCCTGCTAACAGTCCATCTACTACTGTACCAACCACAAATTCCACTCCTGCACCTGAACCTCCAGTACAAAGTACTCAGGCTACAACAAATAGTTCTTCTGCAGTAAACGTCACAGCTACAAATGTGCCTGTGGATACATATGGTCAGGCTGCTTCAAACCTAGCTGTTGGTGGTGATCTTGAGCGGACTATTCAACAAATCATGGACATGGGAGGTGGCAACTGGGACAGAGAAACAATTATACGTGCTCTTCGGGCAGCTTATAATAACCCAGAGCGTGCTGTGGATTACTTGTATTCTGGAATCCCTGAAGCAGCAGAGGTTGCCATACCAGTTCCTCATTTCCCAGCAAGTCAGACAACTGAAACAGGTGGGCCCACTATTGGAGGTGTTTCTGGGGCACCTAATACATTGCCGTTAAACATGTTTCCACAGGAAATAATTTCTGGTGCTGGAGCTGGACTCGGATCTCTGGAATTCCTTAGAAACAACCCCCAGTTTCAAGCATTGCGATCAATGGTGCATTCTAATCCTCAAATTCTGCAGCCTGTACTTCAAGAGCTTGGGAAGCAGAATCCTCATCTATTAAGATTAATTCAGGAGCATCATGCTGAATTTCTCCAGTTAATGAATGAACCTATGGAAGGTTCTGAAGGTGACATATTTGACCAGCCTGAGCCAGACATGCCTCATTCCATCAATGTGACGCCAGCGGAACAGGAGGCAATTGGAAGGCTTGAAGCAATGGGATTTGATAGAGCCTCAGTCATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTACTTACTGGAGAATGCTGGAGATTTTGAGGATTGA 1236 0.4458 MFFILCNRRNCLCLGFSSLAPGFNSNSRCCRRHSVTHSVMKLIVKTLKGSHFEIKVQLSDTVMAVKKNIEDVQGKDNYPCGQQLLIFNGKVLKDETTMGENQVSEEGFLVVMLSKSKTSSSAGASSVQPANSPSTTVPTTNSTPAPEPPVQSTQATTNSSSAVNVTATNVPVDTYGQAASNLAVGGDLERTIQQIMDMGGGNWDRETIIRALRAAYNNPERAVDYLYSGIPEAAEVAIPVPHFPASQTTETGGPTIGGVSGAPNTLPLNMFPQEIISGAGAGLGSLEFLRNNPQFQALRSMVHSNPQILQPVLQELGKQNPHLLRLIQEHHAEFLQLMNEPMEGSEGDIFDQPEPDMPHSINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1361 411 Pfam XPC-binding domain 286 341 IPR015360 GO:0003684|GO:0006289|GO:0043161
Alju11g1361 411 FunFam UV excision repair protein RAD23 40 119 - -
Alju11g1361 411 NCBIfam UV excision repair protein Rad23 40 410 IPR004806 GO:0006289
Alju11g1361 411 Gene3D - 277 342 IPR036353 GO:0003684|GO:0006289|GO:0043161
Alju11g1361 411 SMART CBM 284 327 IPR006636 -
Alju11g1361 411 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 189 229 IPR015940 -
Alju11g1361 411 PRINTS DNA repair protein Rad23 signature 312 334 IPR004806 GO:0006289
Alju11g1361 411 PRINTS DNA repair protein Rad23 signature 361 377 IPR004806 GO:0006289
Alju11g1361 411 PRINTS DNA repair protein Rad23 signature 378 392 IPR004806 GO:0006289
Alju11g1361 411 PRINTS DNA repair protein Rad23 signature 393 408 IPR004806 GO:0006289
Alju11g1361 411 PANTHER UV EXCISION REPAIR PROTEIN RAD23 40 400 - -
Alju11g1361 411 Pfam UBA/TS-N domain 367 402 IPR015940 -
Alju11g1361 411 Pfam UBA/TS-N domain 189 226 IPR015940 -
Alju11g1361 411 SUPERFAMILY UBA-like 345 408 IPR009060 GO:0005515
Alju11g1361 411 Gene3D - 34 116 - -
Alju11g1361 411 SMART ubq_7 40 114 IPR000626 GO:0005515
Alju11g1361 411 MobiDBLite consensus disorder prediction 120 162 - -
Alju11g1361 411 FunFam UV excision repair protein RAD23 homolog 358 406 - -
Alju11g1361 411 Pfam Ubiquitin family 43 115 IPR000626 GO:0005515
Alju11g1361 411 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 365 405 IPR015940 -
Alju11g1361 411 ProSiteProfiles Ubiquitin domain profile. 40 118 IPR000626 GO:0005515
Alju11g1361 411 FunFam UV excision repair protein RAD23 homolog 181 231 - -
Alju11g1361 411 Gene3D - 358 406 - -
Alju11g1361 411 SUPERFAMILY Ubiquitin-like 40 122 IPR029071 -
Alju11g1361 411 FunFam UV excision repair protein RAD23 B 277 342 - -
Alju11g1361 411 SUPERFAMILY XPC-binding domain 283 349 IPR036353 GO:0003684|GO:0006289|GO:0043161
Alju11g1361 411 CDD Ubl_Rad23 40 113 - -
Alju11g1361 411 SMART uba_6 367 404 IPR015940 -
Alju11g1361 411 SMART uba_6 188 228 IPR015940 -
Alju11g1361 411 SUPERFAMILY UBA-like 186 236 IPR009060 GO:0005515
Alju11g1361 411 Gene3D - 181 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1361 Alju-ChrAlju11 26443457 26456260 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1361 40 113 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 1.46e-08 51.2