Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1347 ATGGGTTCTTCTTTGCTGAACTCTCCATATAGGCCATGGACGCCTGCTGATGCTGTTCTTCGAGATTGTTCTCATGGAATCTGCAGCTTCTATTGCCCTCAATGGTGCTCTGTAATCTACCCTCCTCCTCCTTTACCTTCTTTCACCGCCATCGGAGTTGCCGCCACCGCCACCGCCGGTGACGATGACGACGACTCTTCTTCTTCATTCCGGCTCTCTCCTCTCATAGTCGCTCTCATCGGCATCCTAGCAAGTGCTTTCGTTTTAATCACTTACTACACCATCATCTCTCGATTCTGTACAAGACGATCCCGAATCCACGAAAATGACACCAACCAGTGGGTAAACGACAATGACGAGTCGGCGATTCAAGCCACTAATACCGGCGACGGTGACGGTGGCGGTGGCGGTGGCGGTGGCGGAGGCTTGGACGATGCCGTCATCAGATCAATCACAGTCTGTAAGTACAAGAAAGGGGATGGATTAGTCGAAGGCACGGATTGCTCTGTGTGTCTCAGCGAATTCCTAGATTGTGAGACTTTAAGATTGTTGCCTAAATGCAACCACGCGTTTCATCTTCCTTGTATCGATACATGGTTGAGATCGCATTCGAGTTGTCCTCTATGCAGATCTAATATTGTCATATCCAACACTTGCTCGTCTTCGTCTTCTGTTACTTTACCGAATCAGGAAGCTTTGCGAGAACACAGCGTGAATGTGTCTGCGTTGGAACATCAGTACAGGAACGATACAGTGATAGTGATTCAGGGTTTAGAACACGAAATTCAGGTCGGTTTTGCAGGGAATTTGGAGGAGAGGAATGGGATTGAATCGAATCAAGGAAGATTGTTGTTGGTTGCTGATATATTGAGAAGTAGTGAAGACGAGGAGGATGAAGATGAAGAAATCGAGATGGGATCGTCGAAGCAAAATCGGAGACAAAAGTGA 948 0.4768 MGSSLLNSPYRPWTPADAVLRDCSHGICSFYCPQWCSVIYPPPPLPSFTAIGVAATATAGDDDDDSSSSFRLSPLIVALIGILASAFVLITYYTIISRFCTRRSRIHENDTNQWVNDNDESAIQATNTGDGDGGGGGGGGGGLDDAVIRSITVCKYKKGDGLVEGTDCSVCLSEFLDCETLRLLPKCNHAFHLPCIDTWLRSHSSCPLCRSNIVISNTCSSSSSVTLPNQEALREHSVNVSALEHQYRNDTVIVIQGLEHEIQVGFAGNLEERNGIESNQGRLLLVADILRSSEDEEDEDEEIEMGSSKQNRRQK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1347 315 SUPERFAMILY RING/U-box 162 216 - -
Alju11g1347 315 ProSiteProfiles Zinc finger RING-type profile. 168 210 IPR001841 -
Alju11g1347 315 MobiDBLite consensus disorder prediction 293 315 - -
Alju11g1347 315 FunFam RING-H2 finger protein ATL54 143 216 - -
Alju11g1347 315 CDD RING-H2_EL5-like 167 210 - -
Alju11g1347 315 PANTHER RING-H2 FINGER PROTEIN ATL16 64 279 IPR044600 GO:0016567|GO:0016740
Alju11g1347 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 218 IPR013083 -
Alju11g1347 315 SMART ring_2 168 209 IPR001841 -
Alju11g1347 315 Pfam Ring finger domain 167 210 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1347 Alju-ChrAlju11 23567386 23568333 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1347 12 298 C3H Transcription Factor Family AT3G03550 43.137 2.30e-65 207