Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1333 ATGAGCTCCAAATCGAGGCGTCACCAGCGAAGCTCTGGCCGGCGATCTGTTTCTCGGGCGAATGCCGAACCTACCCACTTCATGAAGATCATACTTCCGGGAAACATTCATGCCCAAAACATTAGGATTCCAAGGGAGTTTGTTAGAAGATTCGAGAATGAACTGTGTAGTACTAGTGAGGCAACCATTAGTGTTCCAGATGGTCGTGTTTGGAATATGGAATTGAAGAAATGTCAAGACGAAGAAGTTTGGTTGTGCAAGGGTTGGGAGGAATTTATGAAGCACTACTCTATTAGGTTTGGCTTCTTTTTAGTGTTCAAATATGAAGGCAACTCACTATTCAGTGTGATCATCGTTGATGCGAGTGCTGCTGAGATTGACTATCCACGCAAAGTGAACAACCCTGAGGAGCAGAAACCGGCACCTGAACGACGTAGAAAAAGGCCATACAGCTTCGATCATTGTGGCTACAACACAAGGAGCCAAAGCCATAAGCTGGATGAAGAAAAAGAAGAAGAGATAATTGACATAGACGTAGGCGATGACAATGCCTTATCAAGCCATGGTATATCAGGAAACAAAGATAGATCTGGGCAAAGAGCTATGGAAGCTAACCATAATTTGGAATCAGAAAATCCTCCATACTTTACTACAACAATAAGGGCAGCTCATCTGAATCGTCGATATATTGATGTGCCAGCTTCATTCTGGAAGGTTTATCTGTGCAAGAACGGTCCTATGAAGCTGCAGGATTGTAAGGGACGAAAATGGAAGGTGAATTATACTAAATACGCATCATCTCTTCGAATACACAAGGATTGGATCAATTTCGCAAGGGCCAACAATCTGAAGGAAGGAGATGAGTGTGTTTTTGAGCTTATCAAAAGGAATAACCAGTTTGTATTTCAAGCCAGTGAGCAACTGAGCATCATCGTCTATACAGAAACAAGATTTGAGTCATCATTTTCAACAGGTCTCTTGGCATCACCAATTTCAACTGAAGATGGCCAAATATAG 1017 0.4238 MSSKSRRHQRSSGRRSVSRANAEPTHFMKIILPGNIHAQNIRIPREFVRRFENELCSTSEATISVPDGRVWNMELKKCQDEEVWLCKGWEEFMKHYSIRFGFFLVFKYEGNSLFSVIIVDASAAEIDYPRKVNNPEEQKPAPERRRKRPYSFDHCGYNTRSQSHKLDEEKEEEIIDIDVGDDNALSSHGISGNKDRSGQRAMEANHNLESENPPYFTTTIRAAHLNRRYIDVPASFWKVYLCKNGPMKLQDCKGRKWKVNYTKYASSLRIHKDWINFARANNLKEGDECVFELIKRNNQFVFQASEQLSIIVYTETRFESSFSTGLLASPISTEDGQI 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1333 338 CDD B3_DNA 214 303 IPR003340 GO:0003677
Alju11g1333 338 SMART B3_2 216 308 IPR003340 GO:0003677
Alju11g1333 338 SMART B3_2 27 122 IPR003340 GO:0003677
Alju11g1333 338 MobiDBLite consensus disorder prediction 1 20 - -
Alju11g1333 338 ProSiteProfiles B3 DNA-binding domain profile. 26 122 IPR003340 GO:0003677
Alju11g1333 338 SUPERFAMILY DNA-binding pseudobarrel domain 22 122 IPR015300 -
Alju11g1333 338 ProSiteProfiles B3 DNA-binding domain profile. 215 308 IPR003340 GO:0003677
Alju11g1333 338 CDD B3_DNA 26 120 IPR003340 GO:0003677
Alju11g1333 338 Gene3D - 194 306 IPR015300 -
Alju11g1333 338 Gene3D - 18 123 IPR015300 -
Alju11g1333 338 SUPERFAMILY DNA-binding pseudobarrel domain 211 302 IPR015300 -
Alju11g1333 338 Pfam B3 DNA binding domain 35 117 IPR003340 GO:0003677
Alju11g1333 338 Pfam B3 DNA binding domain 216 303 IPR003340 GO:0003677
Alju11g1333 338 PANTHER B3 DOMAIN-CONTAINING 22 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1333 Alju-ChrAlju11 22208649 22210872 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1333 199 305 B3 DNA Binding Superfamily AT3G18990 33.945 2.04e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju11g1333 B3 3.1e-13 CL0405