Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1265 ATGCCACCAAGGACGGTGAAGAGAGGGGCTGCATCGGCGGCCCGGAGAGGGGGCAGAGGTGGCCGAGGAACACCGAAGGCTGCCCAGAATCAGCAGAATCTTGATTCTGCACAAGAGGTTGTGAAGCTTGAAGAAAAGCAGGTCGTTGAGGAGAAGCCCGTTGTCGAGGAGAAGCCTGTCGTTGAGGAGAAACCCGTTGAGGAGAAACAAGTAGGTATTGATATGAATCAGATGGCTTTTGATATTAACCAAGTAGCTTCAGAGGCCGAAGAAGCGAATCTCGTCACAAATGGGTCTACTGCTGTGAAAAACGATGAAGAGGAGGTTAAGGAGTCCATAGATGAATATGAGAAAGATGAACGCTTAGATCTGGAGGATAATGATCCCGAGTATGAAACTGAGGAGTATTGTGGAGTTGATTATGATGAGAAGGAAATTGAGCATGATGATGTTCAAGAGGTAGATGAGATAGAGGAAGACCCTGACGAGAATTTAGGTGAAGAAGAGGGTGATATAGTTGAGGAGGAGGTGGAAGACGTTCATGGAGAACTTGAGGGTGAAGAGGATGATGAACATCCTGGAGAGGAGCATGAGCATGAGCATGAGCATACGGAGATTGCTGATGCAGAAGAAGATGAACACCATGAAGGTTTGAAAGAGAGGAGAAAGCGCAAGGAATTTGAAGTATTTGTTGGAGGCTTAGATAAGGATGCTACTGAGGATGATCTGAGGAAGGTTTTTAGTGCAGTTGGTGAGGTTACTGAAGTGAGGCTAATGATGAATCCTCAGACTGAAAAGAATAAGGGTTTTGCATTCTTGCGATTTGCAACTGTGGAACAAGCTAAACGAGCTGTAACAGAGCTAAAAAATCCAGTGATTAATGGAAAACAATGTGGGGTAACCCCCAGTCAGGACAGTGACACCCTCTTTTTGGGTAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGTTAAAGCATTATGGAGTTGACAATGTGGAGGATCTGACTTTAGTAGAAGATAGTAATAATGAGGGAATGAACCGTGGATTTGCCTTTTTAGAATTTTCATCTCGGTCAGATGCTATGGATGCCTTTAAGCGATTGCAGAAGAGAGATGTTGTGTTTGGAGTTGATAGGCCTGCAAAGGTTTCCTTTGCAGATTCTTTTATTGATCCGGGTGATGAGATTATGGCGCAGGTCAAAACTGTATTTATTGATGGTTTGCCTCCATCATGGGATGAGGATCGTGTACGGGGTCTTCTTAAGAGATTTGGAGCGATTGAGAAGATTGAGCTTGCCAGAAATATGCCTTCTGCTAAGAGGAAGGACTTTGGATTTGTTACATTTGATACCCATGATGCCGCAGTGACATGTGCTAAAAGCATTAATAATTCTGAGATTGGTGAAGGAGACAGTAAGGCAAAAGTTAGGGCAAGATTATCGAGACCACTTCAGAGAGGCCATGGAAAACATGGTGGTCGTGGGGATTTTCGGTCTAGCCGTGCCTCAGGAAGAGTCACAAGGCCTTCATGGAGTCGTCCACCACCTCGTAGTTTACCTGCCCGTGGGGTACGGGGCATTAGTAGTCGTGTTCCTCCAGTCAGGCCTGTTAGTGTAAGAGATAGACGTCCAACCATGCCTATGACAGTAAGAGCTAGGCCAGTGGCTCCTCCAGCTAGATCCTATGATAGGAGACCAGCTGTTCCTGCATATCCAAAGAGTAGCATGAAGAGAGATTATGGTCGGCGTGAGGATTTGCCACCACCTAGAAGTAGAGTAGCTGCAGATTACAGCTCTCGGGTAGCCTCTGAGAGACGCCCATCTTACAGGGATTATTCAGCTCGTGGCCCTACGTACTCTGAACTTCCTAGAAGTACTTCATCTCGTGTGGCACCTAGGAGGGGTTATGTGGATGATGGCTATGGTCAAAGATTTGAGAGGCCTCCTCCACCACCACCCCCACATCCAAGTTACCGTGAAGGACGCCCTCGTGACTATGATACTCTCTCTGGCTCAAAACGCCAATATGCTGCCATAGATGATGTTCCACCACGATATGCAGACAGTGGTGCTCGCCAGTCTAGAGCTCGATTGGACTATGACTATGGTGGTAGTAGTTCACAGTATGGTGATGCTTATGGGGATAGACTTGGAAGATCTAGTATGGGCTATAGTGGTGGCAGGAGTTCTATGTCAAGTCAAGACTCACATGGGATGTATAGCAGTCGTCAGGGCGTGAGTTACAGTGGAGGTTCTTTTGGCGGCAGTGATGTTGGTGGTATGTACTCCTCCAGTTATGGTGGTGATTATATGTCTCGTGGAAATGATGTTGGTGGTGGCTCATACTCATCACTATATCCTGGCAGAGGTGTGGGTGGTAGTGGCAGTTACATGGGTGGTAGTGGGTCTGGGTCTTATTATTGA 2433 0.4657 MPPRTVKRGAASAARRGGRGGRGTPKAAQNQQNLDSAQEVVKLEEKQVVEEKPVVEEKPVVEEKPVEEKQVGIDMNQMAFDINQVASEAEEANLVTNGSTAVKNDEEEVKESIDEYEKDERLDLEDNDPEYETEEYCGVDYDEKEIEHDDVQEVDEIEEDPDENLGEEEGDIVEEEVEDVHGELEGEEDDEHPGEEHEHEHEHTEIADAEEDEHHEGLKERRKRKEFEVFVGGLDKDATEDDLRKVFSAVGEVTEVRLMMNPQTEKNKGFAFLRFATVEQAKRAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKTVFIDGLPPSWDEDRVRGLLKRFGAIEKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNSEIGEGDSKAKVRARLSRPLQRGHGKHGGRGDFRSSRASGRVTRPSWSRPPPRSLPARGVRGISSRVPPVRPVSVRDRRPTMPMTVRARPVAPPARSYDRRPAVPAYPKSSMKRDYGRREDLPPPRSRVAADYSSRVASERRPSYRDYSARGPTYSELPRSTSSRVAPRRGYVDDGYGQRFERPPPPPPPHPSYREGRPRDYDTLSGSKRQYAAIDDVPPRYADSGARQSRARLDYDYGGSSSQYGDAYGDRLGRSSMGYSGGRSSMSSQDSHGMYSSRQGVSYSGGSFGGSDVGGMYSSSYGGDYMSRGNDVGGGSYSSLYPGRGVGGSGSYMGGSGSGSYY 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1265 810 SUPERFAMILY RNA-binding domain, RBD 223 305 IPR035979 GO:0003676
Alju11g1265 810 MobiDBLite consensus disorder prediction 194 220 - -
Alju11g1265 810 CDD RRM_SF 309 387 - -
Alju11g1265 810 MobiDBLite consensus disorder prediction 726 747 - -
Alju11g1265 810 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 23 810 - -
Alju11g1265 810 MobiDBLite consensus disorder prediction 579 593 - -
Alju11g1265 810 Gene3D - 307 390 IPR012677 -
Alju11g1265 810 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 404 486 IPR000504 GO:0003723
Alju11g1265 810 FunFam RNA recognition water-stress protein1 394 515 - -
Alju11g1265 810 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 305 IPR000504 GO:0003723
Alju11g1265 810 SUPERFAMILY RNA-binding domain, RBD 306 471 IPR035979 GO:0003676
Alju11g1265 810 MobiDBLite consensus disorder prediction 98 220 - -
Alju11g1265 810 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 297 IPR000504 GO:0003723
Alju11g1265 810 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 375 IPR000504 GO:0003723
Alju11g1265 810 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 406 471 IPR000504 GO:0003723
Alju11g1265 810 MobiDBLite consensus disorder prediction 723 747 - -
Alju11g1265 810 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 156 307 - -
Alju11g1265 810 Gene3D - 394 512 IPR012677 -
Alju11g1265 810 FunFam Heterogeneous nuclear ribonucleoprotein Q 308 390 - -
Alju11g1265 810 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 391 IPR000504 GO:0003723
Alju11g1265 810 SMART rrm1_1 228 301 IPR000504 GO:0003723
Alju11g1265 810 SMART rrm1_1 405 480 IPR000504 GO:0003723
Alju11g1265 810 SMART rrm1_1 308 387 IPR000504 GO:0003723
Alju11g1265 810 Gene3D - 168 302 IPR012677 -
Alju11g1265 810 Coils Coil 27 47 - -
Alju11g1265 810 MobiDBLite consensus disorder prediction 483 672 - -
Alju11g1265 810 MobiDBLite consensus disorder prediction 103 117 - -
Alju11g1265 810 CDD RRM_SF 229 300 - -
Alju11g1265 810 MobiDBLite consensus disorder prediction 118 193 - -
Alju11g1265 810 Coils Coil 102 122 - -
Alju11g1265 810 CDD RRM_SF 406 471 - -
Alju11g1265 810 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1265 Alju-ChrAlju11 18628039 18633192 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1265 222 485 Eukaryotic Initiation Factors Gene Family AT1G49760 24.080 1.35e-14 75.9