Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1256 ATGGCTTCTTCTCCTCCTTCTTCTTCGCCTGTTGATTCCCCCACCACTACCCCTCCCACCGATCCTCCCACCGCCGTCCCTCTCGCGGTTGCTATTCCTCCGGCTTTGCCCTCTTCGCAACAGCCTTCGTCTTCCTCTCGCCGCCTTCCTCCTCCATGCTGGTCTTCTGAGGAGACTGCTGCTTTGATTGATGCGTATCGTGACAAGTGGTATTCTCTTGGCCGGGGTAATCTCAAGGCCACGCATTGGCAGGATGTCGCCGATGCTGTCACCTCCCGCTGCCCCGGGGCTTCGCCTCCCAAAACTGCGGTGCAGTGCCGCCATAAGATGGAGAAGCTCCGGAAGCGGTACCGTACGGAGATCCAACGCGCGCGCAATCTGCCTGTTGCGAGGTTCAATTCCTCTTGGGTTCACTTTAAGCGGATGGATGCCATGGAGAAAGGTCCCTCCCCGGTGAAACCTGAGAACGATTCCGATGATAGCCCTGATGAGTTTGACGCCGATGAGGATAATGATTTGTACGAGGAATTCAGAAGCGGTAGTGGGTCCAACACGAGGAGCCTGAACAAGTTGTATCGGAACGGAATGGGCGGAAGCAACGGCAATGGCAGCGGCGGATTTCGGATTCGAATTCCCAATGGGGTAAGCATTGCTCAACCTGGGAATTCCAAATTATATGGGAAATTTTCTGATCAGAAGTATAACTATAACAATAACAACCCCGGTTCAAAATCTGGGCATGGCTTTAATAGCCCCAATTATGAAACTAGGGTTTTGAAAGAGAGAAGTGGATTGGGGAAAAGGGAAAGAGAGAGGGAGAGAGATCCTGTGAGCGAGATGGTGTGTGCAATTAAGGTTCTGGGCGATGGGTTTGTGAAGATGGAGCAGATGAAGATGGAGATGGCGAGGGAGATTGAGAGTATGCGAATGGAGATGGAGATGAAGCGTACTGAGATGATTCTGGAGTCGCAGCAGAGGATTGTGGAGGCATTTGCTAAAGCAGTTTCAGATAAGAAGACAAAGAGAATGGCTTCATCACCTTCAGAATCGTAG 1053 0.5166 MASSPPSSSPVDSPTTTPPTDPPTAVPLAVAIPPALPSSQQPSSSSRRLPPPCWSSEETAALIDAYRDKWYSLGRGNLKATHWQDVADAVTSRCPGASPPKTAVQCRHKMEKLRKRYRTEIQRARNLPVARFNSSWVHFKRMDAMEKGPSPVKPENDSDDSPDEFDADEDNDLYEEFRSGSGSNTRSLNKLYRNGMGGSNGNGSGGFRIRIPNGVSIAQPGNSKLYGKFSDQKYNYNNNNPGSKSGHGFNSPNYETRVLKERSGLGKRERERERDPVSEMVCAIKVLGDGFVKMEQMKMEMAREIESMRMEMEMKRTEMILESQQRIVEAFAKAVSDKKTKRMASSPSES 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1256 350 FunFam Trihelix transcription factor ASIL2 54 119 - -
Alju11g1256 350 Pfam Myb/SANT-like DNA-binding domain 52 145 IPR044822 -
Alju11g1256 350 Coils Coil 298 318 - -
Alju11g1256 350 MobiDBLite consensus disorder prediction 145 205 - -
Alju11g1256 350 MobiDBLite consensus disorder prediction 1 54 - -
Alju11g1256 350 MobiDBLite consensus disorder prediction 230 252 - -
Alju11g1256 350 ProSiteProfiles Myb-like domain profile. 54 114 IPR001005 -
Alju11g1256 350 Gene3D - 54 119 - -
Alju11g1256 350 Coils Coil 107 127 - -
Alju11g1256 350 MobiDBLite consensus disorder prediction 11 30 - -
Alju11g1256 350 MobiDBLite consensus disorder prediction 177 201 - -
Alju11g1256 350 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 23 337 IPR044823 -
Alju11g1256 350 MobiDBLite consensus disorder prediction 230 253 - -
Alju11g1256 350 MobiDBLite consensus disorder prediction 36 52 - -
Alju11g1256 350 MobiDBLite consensus disorder prediction 159 173 - -
Alju11g1256 350 SMART 118neu2 61 150 IPR006578 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1256 Alju-ChrAlju11 18476747 18477799 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1256 1 145 Trihelix Transcription Factor Family AT3G14180 34.899 1.04e-19 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Alju11g1256 Myb_DNA-bind_4 3.9e-21 CL0123