Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1231 ATGAGCGGTTCAACTCATTCGTTTAGAGGAATCGTCTTACTTCACGTGCTAGACCCTGAGCGAGTTGCTTTTGGAAAGGATCAACTGACTTTAGTTTCTGCGAAATCGAAATGGCTTCAAGTTTCCGATGCTGATGATCTTTTGATTGATCGACCAGTTTGGGTTTCTGATTTTTCACACTTCTCTGCGTCCGAAGAGAAGTTCGCCGGAAGACATCAACATCCATTTGATTCTCACCCATTTGAGGCAATTCTCCAGGGGTCATGGCAAGCTTTGAGGTACCTAACAATTGAAGGAGGAACAATGGTCTTACATTTTAAAGATAATAACTATGTGGTTAGGGAGAAAGCTCCTATTTCAGACATTCGGATAAGGTCTAGGAAAGCAACTGTATCAGATTGCTCCAGCTTTTTAAGACCTGGAATTGACATATGTGTACTTTCTTCCTTTCAATCTACTAATGGCTCAGATAAAAAAAGTCTTAAACCTGTGTGGGCTGATGCTAAAATAAGTTCTATACAGAGAAAGCCACATGAACCTGGGTGCTTGTGTCAGTATTATGTGAACTTTTATGTTAATCAAGGTTGTATTGGTTCTGAGGTAAGAACTCTGAATAAGGAGATCAAAGTAGTTGGAATAAATCAAATTTCTATTCTCCAAAGGCTTGGGCATAGTCCTTGTGAAGATCATCACTATCGGTGGGATTCATCTGAGGACTGGCATGCAGTACCACAAACTAAACTGCTTACAGGGAAATTTTTATCTGATATTTCATGGTTAATTGTCTCATCAGTTTTAAAGAAGGTTCCATTTTGTGTGAGATCTGCAGATAACAAGGTTGTGTATCAAATCATGGGGGGTGATGATATTAGCTCTCTATTGGATGTTGTAAATTTCAGAATAGACAACAACATGTTAGTACCCATTGTTTCCCAAGTTATTTCATCAGACACTGTTAAGGTTGACGATACAGATGACTCCCATAAAGATAAAGCAATTCCATCTTATAATCCTGAGGGTTTGCGTCGTTCCAAACGCCGGAATGTACAACCCGAGCGCTACCTTGGCTGTGATGAGACTCATGTGTTGGATGTTGGTTTTGTTCGCACTCGGCCATACAAGATGGACACCCGAAAAGATGATATTGAGGATGATGAATTGTCAATGCCATTGTCATCCCTGATTGGTTTGCAAAAATGTTCTGGAGTGAAGGGTGATGACAATGGACTAAAGTCTGATAGGATAAAGTCTTACAACAAACTTAAAGTGTATAAAAGGAGGGCTAAATCTAAGGAGGTGAATTTAGATGATGCCAATTCAGGTGATGCCAATGAAAATGAAACTCAATCTCAACTTGCCATTGTTCCTGTTCCTCTAGATTGTGATCCTATTAACATTGAGCATTTTGATTCCAATGCCAAGGTCTCTAAACATTACACACAAAGAAATGCTGAATTTCATTCCAAATATTATCACATGATGGGTAGTCCCGAACCAAAGAGGAATGATATGGATTTGTTAACTTTTGAATCCTATAATCATCCTTCAAAGATTCCCGATCTTGAAGAGATTGATGATATTGCTTCCCGACGTCATTCTAATCACGGCATTCCGAAATTGAAGGGGAAAAATTCTTGTGGTTTTGATGATATGGATTTTAAAGGCAAGTGGGAAGGGATAAATTCCAATAAAGCGGTTCAAGGGAGAAAATATCATTTAACAATTTCAAGAGTCAGACAATCTGATGAAGAAAGAACTTATAAAGCTAGGTCCTTAAGTGCAGGTGCCTACAAGGAATTGATAGACTCATATTTAAAGAATATGAATGCAAAACCATCAAAAGCAGAGCCGCCTATTACTGAGCAGTGGATACAATTCAAGGAAACAAGTAACTTAGGACAAAAGAGGGAAACAAAGGCATCCCCAGTAGAGGATGAGGAAGAAACTGATGAACTAGATATATTGTGGAGAGAAATGGAAGTTTCATTGGCATCAAGTTATGTTGAAGAAGGCACAGAGGGTTCAGGTGCCCCAGGTTTTACTGAGGCATGGGAAAAAACCGATTCGCTTTGTCGCCACGATTATAGAATGAATGAAGAAATTGGAATTTACTGTGTCTTATGTGGCATTGTCAGTACAGAGATTAAAGATGTTTTGCCACCCTTTTTGGAACGTTCGTGGCACTATGAGGAGAAGCCACACTGTGGAGAAGGTTCAGAACCAGAACCAAAGGCTGATGAAAATGATGATTTTCATCTTTTGTTGACTGATGCTTTGCCTGATCAACCTATAACTGGAGAAAATGATAGTGTATGGGCATTAATTCCTGAACTTAGGTGGAAGTTGCACATCCACCAAAAAAAAGCTTTTGAATTTCTTTGGAAAAATATTGCTGGGTCTATGGACCCCACACTTATGGAAGCAGCATCCAAAAAAAGAGGTGGTTGTGTGATATCTCATTCTCCTGGAGCTGGAAAAACATTCCTTATTATTGCCTTTCTTGTTAGCTACTTGAAGTTATTCCCAGGGAAGCGACCATTGGTTCTTGCTCCGAAGACAACACTTTATACATGGTATAAAGAATTTATTAAATGGAAAATTCCTATTCCAGTGTATCTAATTCATGGTCGTAGAACCTACCGAGCGTTCAAGCAGAATAAAGTGTTTTTTCATGGTGGTCCAAAGCCTACTGATGATGTCAAGCATATTTTGGATTGCCTGGAAAAGATACAAATGTGGCACGCACACCCAAGTGTTCTAGTCATGGGTTATACTTCATTTTTAACATTGATGCGAGAGGATTCAAAGTTTTCTCACAGAAAGTACATGGCTAAAGTATTAAGGGAAAGTCCTGGTATTCTTATACTAGATGAAGGGCACAATCCTAGAAGCACAAAATCAAGATTGAGGAAAGTTTTGATGAAAGCACAGACAGAATTGAGAATATTACTTTCGGGTACATTGTTCCAGAACAACTTCTGTGAATACTTCAACACTCTTTGCTTGGCCAGGCCAAAATTTGCCTATGAAGTGTTGAAAAAACTGGACCCTAAATACAAGAGAAAATTGAAAGGAGCAGGGAAAGCACGTCATTTAATAGAGGCGCGAGCTAGAAAATTCTTCTTGGATAATATTGCAAAAAAAGTTGACTCAAAGGATGAAAAGGAGCAAATGCAGGGTCTGAACATGTTGAGAAAGATGACCAGTAGTTTTATAGATGTTTATGAAAATGGGAGTTCAGACGATCTTCCTGGTTTACAAATCTATACATTGTTGATGAATACTACTGATATACAGCATGAAATTTTGAAAAAACTCCAGAAGAAAATGTCTGCATGCAATGGATATCCTTTGGAGTTGGAGCTTTTGATAACCCTTGGATCGATACATCCTTGGTTAGTCAAAACAGCTGTATGTGCTGAAAAGTTTTTCTCTATAGAGCAATTGATGGAGCTAGAGAAATGGAAGTATGATTTGAAAAAAGGGTCAAAAGTGAAATTCGTTTTGAGCCTGGTCTATCGCGTTGTAAGGAATGAGAAGATTCTAATGTTTTGCCATAACATTGCACCTGTGAGATTATTTACAGAATTATTTGAGAAGTTCTTTGGATGGTATAGAGGTCGAGAAGTCTTAGTTCTTACTGGGGAGCTAGAGCTCTTTGAACGTGGAAGGATAATGGATAAGTTTGAGGATCCCAACGGACCATCAAAAATACTTCTTGCTTCAATTTCATCTTGTGCTGAAGGCATTAGTTTGACAGCAGCATCTCGGGTGATTTTGTTGGATTCAGAATGGAATCCTTCCAAGACAAAACAGGCTGTTGCACGTGCTTTTCGTCCTGGTCAGCAAAAGATGGTTTATGTATACCAGCTGCTGGCAACAGGCACATTGGAGGAAGATAAGTATCGAAGAACCACCTGGAAAGAGTGGGTTTCCAGCATGATTTTTAGTGAAGAATATGTGCAGGACCCTTCCCGATGGCGAGCAGAAAAGATTGAAGATGACATACTGCGAGAAATGGTTGCAGAAGACCGCTCCAATTCATTCCATATGATTATGAAGAATGAAAAGGCGTCCACAAACTGA 4086 0.3911 MSGSTHSFRGIVLLHVLDPERVAFGKDQLTLVSAKSKWLQVSDADDLLIDRPVWVSDFSHFSASEEKFAGRHQHPFDSHPFEAILQGSWQALRYLTIEGGTMVLHFKDNNYVVREKAPISDIRIRSRKATVSDCSSFLRPGIDICVLSSFQSTNGSDKKSLKPVWADAKISSIQRKPHEPGCLCQYYVNFYVNQGCIGSEVRTLNKEIKVVGINQISILQRLGHSPCEDHHYRWDSSEDWHAVPQTKLLTGKFLSDISWLIVSSVLKKVPFCVRSADNKVVYQIMGGDDISSLLDVVNFRIDNNMLVPIVSQVISSDTVKVDDTDDSHKDKAIPSYNPEGLRRSKRRNVQPERYLGCDETHVLDVGFVRTRPYKMDTRKDDIEDDELSMPLSSLIGLQKCSGVKGDDNGLKSDRIKSYNKLKVYKRRAKSKEVNLDDANSGDANENETQSQLAIVPVPLDCDPINIEHFDSNAKVSKHYTQRNAEFHSKYYHMMGSPEPKRNDMDLLTFESYNHPSKIPDLEEIDDIASRRHSNHGIPKLKGKNSCGFDDMDFKGKWEGINSNKAVQGRKYHLTISRVRQSDEERTYKARSLSAGAYKELIDSYLKNMNAKPSKAEPPITEQWIQFKETSNLGQKRETKASPVEDEEETDELDILWREMEVSLASSYVEEGTEGSGAPGFTEAWEKTDSLCRHDYRMNEEIGIYCVLCGIVSTEIKDVLPPFLERSWHYEEKPHCGEGSEPEPKADENDDFHLLLTDALPDQPITGENDSVWALIPELRWKLHIHQKKAFEFLWKNIAGSMDPTLMEAASKKRGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWKIPIPVYLIHGRRTYRAFKQNKVFFHGGPKPTDDVKHILDCLEKIQMWHAHPSVLVMGYTSFLTLMREDSKFSHRKYMAKVLRESPGILILDEGHNPRSTKSRLRKVLMKAQTELRILLSGTLFQNNFCEYFNTLCLARPKFAYEVLKKLDPKYKRKLKGAGKARHLIEARARKFFLDNIAKKVDSKDEKEQMQGLNMLRKMTSSFIDVYENGSSDDLPGLQIYTLLMNTTDIQHEILKKLQKKMSACNGYPLELELLITLGSIHPWLVKTAVCAEKFFSIEQLMELEKWKYDLKKGSKVKFVLSLVYRVVRNEKILMFCHNIAPVRLFTELFEKFFGWYRGREVLVLTGELELFERGRIMDKFEDPNGPSKILLASISSCAEGISLTAASRVILLDSEWNPSKTKQAVARAFRPGQQKMVYVYQLLATGTLEEDKYRRTTWKEWVSSMIFSEEYVQDPSRWRAEKIEDDILREMVAEDRSNSFHMIMKNEKASTN 1361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1231 1361 CDD SF2_C_SNF 1156 1292 - -
Alju11g1231 1361 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1167 1328 IPR001650 -
Alju11g1231 1361 Pfam SNF2-related domain 788 1058 IPR000330 GO:0005524|GO:0140658
Alju11g1231 1361 MobiDBLite consensus disorder prediction 320 344 - -
Alju11g1231 1361 SMART ultradead3 778 1022 IPR014001 -
Alju11g1231 1361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 752 1008 IPR027417 -
Alju11g1231 1361 Gene3D - 1137 1355 IPR027417 -
Alju11g1231 1361 Pfam Helicase conserved C-terminal domain 1164 1280 IPR001650 -
Alju11g1231 1361 Gene3D - 763 1047 IPR038718 -
Alju11g1231 1361 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 113 1360 IPR044567 GO:0080188
Alju11g1231 1361 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 807 1006 IPR014001 -
Alju11g1231 1361 Coils Coil 1355 1361 - -
Alju11g1231 1361 MobiDBLite consensus disorder prediction 630 649 - -
Alju11g1231 1361 CDD DEXHc_ATRX-like 782 1007 - -
Alju11g1231 1361 SMART helicmild6 1192 1281 IPR001650 -
Alju11g1231 1361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1081 1339 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1231 Alju-ChrAlju11 17486746 17493422 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1231 1207 1299 RAD5 or RAD16-like Gene Family AT5G05130 38.947 1.45e-11 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju11g1231 SNF2_N 1.5e-15 CL0023