Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1224 ATGCGGACCCCTCCGCAATCATATTTTTACCATGTCTCTGGTCAACCTGATCATCCTGAAGCCTTTCAAAACCTTCCTATCCAAAGCCATTACCAAACTGGGAGACTTAATTTTATCGTCAAACTTTGTGTTTGTTTCGAGCTTAGTTTTCGTTCTGGTGAGATAGTTGGGAGCACAAGGGTTTATTCACCACCAATTTCCTCTCATTATATATCATGTGCAGAATTTTTTCGAATTGGATCGAGTTTACTTCGGACGAATCTATCCCATCGTTTAATCCATGCTCAAAACCTTGATGCTTTGATACCAAGAATCATGTCCACAGCTCAACAATGGTTTCATGATAATTGTCCTTCACCTTCTGTTCTTGAAGGTGATGGGATCACTGTATTCCCTTTAGCTATTGATGTTATCGTTAGATTTGCTATGAGTATGGATTTTGTGAATTTGTTGGAAACAATGAGTGTGGACGAGTCCATGCAAGAGATTAATATGGTTCCTGCCTCTGAAGAAGCCATCCAATCACTCAACACTATCGAACTTGAAGAAAATACTAGTAATGAGCAGTGTTGTATTTGTCTTGAAGATTTTGGTGAAGCTGAGATCTCAACAATGCCATGTCATCATAATTTTCACAAAAATTGTATTATAAAGTGGCTAAAAACAAGTCATTTATGTCCTTTATGTCGGTATCTAATGCCTGTAGCCAATCGTGCTTAG 720 0.3833 MRTPPQSYFYHVSGQPDHPEAFQNLPIQSHYQTGRLNFIVKLCVCFELSFRSGEIVGSTRVYSPPISSHYISCAEFFRIGSSLLRTNLSHRLIHAQNLDALIPRIMSTAQQWFHDNCPSPSVLEGDGITVFPLAIDVIVRFAMSMDFVNLLETMSVDESMQEINMVPASEEAIQSLNTIELEENTSNEQCCICLEDFGEAEISTMPCHHNFHKNCIIKWLKTSHLCPLCRYLMPVANRA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1224 239 SMART ring_2 190 229 IPR001841 -
Alju11g1224 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 113 234 - -
Alju11g1224 239 SUPERFAMILY RING/U-box 183 234 - -
Alju11g1224 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 235 IPR013083 -
Alju11g1224 239 ProSiteProfiles Zinc finger RING-type profile. 190 230 IPR001841 -
Alju11g1224 239 Pfam Ring finger domain 189 230 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1224 Alju-ChrAlju11 17389298 17390017 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1224 158 238 C3H Transcription Factor Family AT1G18760 36.145 2.46e-14 68.2